KEGG   Lactiplantibacillus plantarum ST-III: LPST_C0622
Entry
LPST_C0622        CDS       T01324                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lps  Lactiplantibacillus plantarum ST-III
Pathway
lps03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lps00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LPST_C0622
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lps03019]
    LPST_C0622
   03016 Transfer RNA biogenesis [BR:lps03016]
    LPST_C0622
Enzymes [BR:lps01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     LPST_C0622
Messenger RNA biogenesis [BR:lps03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LPST_C0622
Transfer RNA biogenesis [BR:lps03016]
 Prokaryotic type
  tRNA degradation factors
   LPST_C0622
SSDB
Motif
Pfam: RNB CSD2 S1 OB_RNB DUF6293 RNase_II_C_S1
Other DBs
NCBI-ProteinID: ADN97844
Position
667727..670141
AA seq 804 aa
MSEANLQEQILTFLQAHPDRTYSVEQLTDELHFTGATAFTFLVKELANMERKKLVSTDDH
DHFKLVQETKTVEGSFHGNDKGFGFVRYDPDLPDIYINPDNTQFAITGDDVAVEIIRPAR
PGSDRGPEGKIVSIVKRDYTQIVGAYTPSTDEDGIIGSVEIKDKKLSKYQLLITDQGLHP
TEGEVIIAEVAAYPDAQHPTRMIGIAKQVIGSVDDPGMDVLQVVYQHDVPSVFPEEVTDE
ANRIPDYVTDEEKVGRVDITDQPLVTIDGAESKDLDDAVVAWRLPNGNFHLGVHIADVSH
YVTENSELDREAFKRGTSVYLTDRVIPMLPRRLSNGICSLNPDVERLAMSCEMEIDQTGE
IVNHKIFQSVIRSHARMTYDAVNQILEAHDPKTREKYADLVDMFDTMGDLHRILYKHRRH
RGAIDFDDNEAKIIVDEAGHPIDIQLRVRGLAERMIESFMLAANETVAKNYSQLKVPFIY
RVHETPDSDRMLSFFEFVTNFGVSVKGSSKDVKPKMLQDVLKKVAGKPEEAMVSVMMLRS
MKQARYADQSLGHFGLAAPYYTHFTSPIRRYPDMMVHRLIRHYAENGTGEEARARYRDNL
PNIAETTSDHERRGIDTERDVDSMKKAEYMADHVGETFEAVVDSVMKFGLFVELENTVEG
LVHISTMDDDYYEYVEKQLALVGRKTKRTFRIGQPVKVQLMRVDKDQREVDFKLLNPEEA
PKTDLLPKREHHDNYRGNNRRGGNNGNYRRNGNNNNRNNDHRGGHNNNHRNGNSNGRRNN
NNHNSNNNNHSTNNNRRSSTDRRR
NT seq 2415 nt   +upstreamnt  +downstreamnt
atgtcagaagcaaacttacaagaacaaatcctgacttttttgcaagctcatcccgatcgc
acgtatagtgttgaacaactaacggatgaattgcattttacaggcgcaacggcgtttact
tttctagtaaaggaacttgcgaatatggaacgtaaaaaattagttagtaccgatgatcat
gatcatttcaagctggtccaggaaacgaagactgttgaaggttcatttcatggtaatgac
aagggctttggtttcgttcgttacgatcccgatttgcctgatatttacattaatccggac
aacacgcagtttgccattaccggtgacgatgttgcggttgaaatcattcgaccagcccgt
cccggttccgaccgcggccctgaaggtaaaattgtcagcatcgttaaacgggactatacc
cagattgtcggtgcgtatacaccaagtacggatgaagacgggattattggttctgtggaa
attaaggataagaaattatccaaatatcagttattaatcactgatcagggcttacacccc
actgagggggaagtcatcattgctgaagtggctgcttatcctgacgctcagcatccaacg
cggatgattgggattgccaagcaggtcattgggagtgttgatgatcctgggatggacgtc
ttacaagtggtctaccaacacgacgtcccatcagtgtttccagaagaagtgacggatgaa
gccaaccggattccggattacgtgactgatgaagaaaaagttggtcgggtcgacattacg
gaccagccattagtaacgattgatggcgccgaatctaaagacttggatgacgcggttgtt
gcttggcgcttgccaaatgggaacttccatctaggcgttcacattgcggatgttagccat
tatgtcaccgagaactctgagttagaccgggaagcattcaaacgtgggacgtcagtttac
ttaactgaccgtgtgattccaatgttgccacggcggctatcaaacgggatttgttcctta
aatcctgatgttgaacgattagccatgagttgtgagatggagattgatcaaacgggggaa
atcgttaaccataagattttccaaagtgtgattcggtcacatgcccggatgacttatgac
gctgttaatcagattctcgaagcccatgaccccaagacgcgtgaaaagtacgcggacttg
gtcgacatgtttgatacgatgggcgacttacaccgtatcttgtacaagcatcggcggcat
cgtggtgcgatcgattttgatgataacgaagctaaaattatcgttgacgaagccggtcac
ccaattgacattcaattacgggtacgtggcttagctgaacgaatgatcgaaagtttcatg
ttggcagccaacgaaacggttgcaaaaaactatagtcaacttaaggtaccgtttatctac
cgggtacatgaaacgcctgatagtgaccggatgcttagtttctttgaattcgtcactaac
tttggtgtcagtgtcaaggggagttctaaggatgttaagccgaagatgcttcaagacgtt
ttgaagaaggttgctggtaagcccgaagaagccatggtctcagtcatgatgctgcggagc
atgaagcaggcccgatacgctgaccagtcgcttggtcactttggattggcggcaccgtat
tatactcactttacgtcaccaattcggcggtatccagatatgatggttcatcgtttgatt
cgccattatgctgaaaacggcactggtgaagaagcccgggcacgttatcgggataaccta
ccaaatattgcggaaacgacttctgatcatgaacggcgggggattgatactgaacgcgac
gttgattcgatgaagaaggctgaatatatggctgatcacgttggtgagacgtttgaagcc
gttgttgattccgttatgaaattcggtctgtttgttgaactagaaaataccgttgaaggc
ttagttcatatcagtacgatggacgacgactactacgaatacgttgaaaaacaattagcg
ttggttggccgtaagacgaaacggacatttagaatcggccagcccgtcaaagttcaacta
atgcgggtcgataaggatcaacgagaagtcgactttaagttattgaatcctgaagaagcg
ccaaagactgatttattgccaaagcgggaacatcatgataactatcgtggtaataaccgg
cgtggtggcaataacggtaactaccggcgaaatgggaacaataataaccggaataacgac
catcgtggtggccacaacaataaccatcgtaatggcaatagcaatggtcgccggaacaat
aataatcataatagcaacaataataatcatagtactaacaacaatcggcggtcatcaact
gatcgtcggcgttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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