KEGG   Lacticaseibacillus rhamnosus Lc 705: LC705_00997
Entry
LC705_00997       CDS       T00990                                 
Symbol
rnr
Name
(GenBank) Exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
lrl  Lacticaseibacillus rhamnosus Lc 705
Pathway
lrl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lrl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LC705_00997 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lrl03019]
    LC705_00997 (rnr)
   03016 Transfer RNA biogenesis [BR:lrl03016]
    LC705_00997 (rnr)
Enzymes [BR:lrl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     LC705_00997 (rnr)
Messenger RNA biogenesis [BR:lrl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LC705_00997 (rnr)
Transfer RNA biogenesis [BR:lrl03016]
 Prokaryotic type
  tRNA degradation factors
   LC705_00997 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1
Other DBs
NCBI-ProteinID: CAR89836
Position
989031..991400
AA seq 789 aa
MTTVGHIRNELLATFRKNPNIDYSVQTLSRALKLSEGGDFKVLVQALNGMENDNLIHANH
EGRYALGGAPKVLTGTFRGNEKGFGFVAVEGLDNDVYVPAMNTDFALDGDTVEVRIVREA
RPNDSRGPEGEITKIVQRSLTTLVGEFKPFSDKDRAKSGFIGMVVSHEKKLKNFPVYVKD
TGNIPQLGDMTVTEITEFPTEYHPKLMYGIVVETLGNKNDPGVDIMSLVMQNHIKTEFPD
EVMDQTNAIPDHVTPEERVGRKDITDQAVVTIDGDDSKDFDDAVVVWKLPNGNFHLGVHI
ADVSHYVTEGSALDQEAFDRGTSTYLVDRVIPMLPFRLSNGICSLNPGVDRLAMSCDMEI
DHDGHVVNHEIYQSVIKSHARMTYNNVNKIVTDHDPEVMAEYQELVPMFEDMVELHQILY
KMRHARGAIDFEENEAKIIVDDMGHPTDIVLRERGVSERMIESFMLAANETVAEHYNKQH
LPFLYRVHETPDADRVKEFMEFIASFGITVPMKKGKEITPKQLQDVVTDVTGTPEEAMVN
VKLLRSLKQARYSPDPLGHFGLAAKYYCHFTSPIRRYPDLVVHRLIRDYALEGTTDDVKT
SWNKKLPDIATQASMAERRSIDAERAVDDLKKAEYMADKVGEEFDAVVSGVTSFGMFVAL
PNTVEGLVHITRMSDDYYSFVESQMALVGERTKRTYRIGQSLRVKLDNVDIDQRQVDFSL
IPDEKTPTSDLGKLVKKDDRRDRRSNGSRPSFGNNGRGGNRNQPNNQRPHKPAGAPHQGK
HYNAKRGTK
NT seq 2370 nt   +upstreamnt  +downstreamnt
atgaccacagttggccatattcgtaatgaactattagcaacatttcgtaagaatccgaac
attgattattcggttcaaacactcagtcgcgcacttaagttaagtgaaggcggcgatttt
aaagtactcgtccaggcgttaaacggtatggaaaatgataacctgattcacgccaatcac
gaaggacgttatgcattgggcggcgcgcctaaagtcttgaccggcactttccgcggcaac
gaaaaaggctttggcttcgtggcagttgagggcttggacaatgatgtttatgtaccggcg
atgaacaccgattttgcgcttgatggcgataccgttgaagtgcggatcgttcgtgaagcc
cgtcccaatgatagtcgcggacctgaaggcgaaatcactaagattgtgcagcgcagttta
accacactggttggtgaattcaaaccattttccgataaagatcgggctaagtctggattt
atcggaatggtggttagtcatgaaaagaaactgaagaattttccggtttatgttaaagat
accggtaatattccgcaactcggcgatatgaccgtgacggagattactgaatttccaacc
gaatatcatcccaagttgatgtatgggatcgttgtcgagacgttaggcaacaagaatgat
cctggcgttgatattatgtcgctggtcatgcaaaaccatatcaaaacggaatttccggat
gaagtgatggatcagaccaatgccattcccgatcacgttacgccagaagaacgagttggt
cgcaaagatattaccgatcaggctgttgtcacgattgacggggatgacagtaaagacttt
gacgatgccgtggtggtttggaaattaccaaatggaaacttccatcttggggttcacatt
gccgatgtttcgcattatgtgacggaaggctctgcgttggatcaagaagcatttgatcgt
ggtaccagtacgtacttggttgatcgcgtcattccaatgctgccatttcgactatccaat
ggcatttgttcgttaaatccaggtgtagatcgattggcaatgtcatgtgatatggaaatc
gatcatgatggtcatgtcgtaaaccacgagatttatcaaagtgtgatcaagagtcatgcc
cggatgacctacaacaatgtgaataaaatcgtgaccgatcacgacccggaagtcatggcc
gaatatcaagaactggtacccatgtttgaagacatggttgaattgcatcagatcttgtat
aaaatgcgtcatgctcgcggtgccattgattttgaagaaaacgaagccaaaatcattgtg
gatgatatgggtcatccaactgacattgtgctgcgcgaacgcggcgtctcagagcgcatg
attgaatccttcatgctggcagcaaatgaaaccgtggctgagcactacaacaagcagcat
ttaccattcctctatcgggtacatgaaaccccggatgcagatcgcgtcaaggaattcatg
gagttcattgccagtttcgggatcacggtaccgatgaaaaaaggcaaggagatcactcct
aaacaactgcaagatgttgtaaccgatgtaactggcacgccagaagaagccatggtcaat
gttaaattattgcggagcttgaaacaggcacggtactcaccagatccgctggggcatttt
ggcttagcggcaaaatactattgtcacttcacaagcccgatccggcgttatcctgacttg
gttgtgcaccgcttgattcgggattacgctctggaaggcaccaccgatgacgtgaagacg
tcttggaataagaagctgcctgatattgcgacccaagcatcgatggccgaacgtcgcagc
attgatgccgagcgtgccgttgatgacctgaagaaagctgaatacatggctgataaggtt
ggcgaagaatttgacgccgttgtcagcggtgtcacgagcttcgggatgtttgtggcactg
ccaaacaccgttgaaggcttggttcacatcacacgaatgagcgatgattactattcgttt
gtcgaaagtcaaatggccttagtcggtgaacgcaccaagcggacttatcgaatcgggcaa
tcgttgcgcgtgaagttagacaatgtggacatcgatcagcggcaagttgacttttcattg
attccagacgaaaaaacgccaaccagcgatttaggcaagttggttaaaaaagatgatcgc
cgtgatcgacgctcaaatggcagtcgcccgagcttcgggaacaatgggcgtggtggtaat
cgtaatcagcccaataatcaacgaccacataagccagcaggtgcgcctcatcaaggtaaa
cattataacgccaagcgcgggactaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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