KEGG   Lacticaseibacillus rhamnosus Lc 705: LC705_02501
Entry
LC705_02501       CDS       T00990                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta chain
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
lrl  Lacticaseibacillus rhamnosus Lc 705
Pathway
lrl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lrl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LC705_02501 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lrl03021]
    LC705_02501 (rpoB)
   03400 DNA repair and recombination proteins [BR:lrl03400]
    LC705_02501 (rpoB)
Enzymes [BR:lrl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LC705_02501 (rpoB)
Transcription machinery [BR:lrl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LC705_02501 (rpoB)
DNA repair and recombination proteins [BR:lrl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LC705_02501 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: CAR91340
Position
complement(2536705..2540307)
AA seq 1200 aa
MAGHLVNYGKHRTRRSYARIKEVLDLPNLIEIQTNSYQWFLDEGLKEMFDDIMPIDDFQG
KLSLEFVGYQLLEPKYTVEEARQHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMT
KQGTFIINGAERVIVSQLVRSPGVYFHSETDKNSRVTYGTTVIPNRGAWLEYETDAKDIA
YVRIDRTRKIPLTELVRALGFGSDQDIINMFGDNDSLMLTLEKDVHKNTDDSRTDEALKD
IYERLRPGEPKTADSSRSLLYARFFDPKRYDLASVGRYKVNKKLSLKTRLLNQVLAETLA
DPDTGEVLAQKGTKVDRQVMDKLAPYLDRDDFKTVTYQPSDQGVMTDPIELQSIKVYSQV
TPDKEINLIGNGHIGKKVKHILPADVLASMNYFLNLQEGLGTVDDIDHLGNRRIRSVGEL
LQNQFRIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN
PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLASYA
VVNPYGFIETPYRRVSWDTHKVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVDDTVLAR
HKDNNIEISPDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPHA
PLVGTGMEYKAAHDSGTAVLANNAGTVEYVDAKQIRVRREDGALDTYKLMKFKRSNAGKN
YNQRPIVTIGDHVDVDEIIADGPAMQNGELALGQNPIIAFMTWNMYNYEDAIVLSERLVK
DDVYTSIHIEEYESEARDTKLGPEEVTREIPNVGEEALKDLDEFGVVRVGAEVRDGDILV
GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIQDVKIFTREAGDELSP
GVNMMVRVYITQKRKIQVGDKMAGRHGNKGTVSVVVPEEDMPYLPDGTPVDICLSPMGVP
SRMNIGQVLELHLGMAARNLGIHVATPVFDGANDKDLWATVKEAGMPSDGKSVLYDGRTG
EPFENRVSVGVMYYMKLSHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGDPIPKPGVPESFRVLVKELQALGLDMK
VLGADKQEIELRDMDDDEDDVVSVDALAKFAAQQEEKKAHEAATQASDGQSADNSTDDKK
NT seq 3603 nt   +upstreamnt  +downstreamnt
ttggcaggacacttagtgaattatggtaagcaccggacacgccggtcttatgcccggatc
aaggaagttttggatcttcctaatctgatcgagatccaaacgaattcttaccaatggttc
ctcgatgaaggtcttaaagaaatgttcgacgatattatgccgatcgatgactttcagggg
aaactgtcactggaatttgtcggctatcaactgctggaaccgaaatatactgtcgaggaa
gcacgccaacacgatgcgaactactccgcaccattgcatgtaaccttacgtttgacgaat
catgaaactggcgaaatcaagagccaggacgtcttttttggtgattttccattaatgacg
aaacaaggaacgttcattatcaacggggcagaacgggttatcgtttcccagctggttcgt
tctcctggcgtttacttccatagtgaaacagataagaattcacgggtgacgtatggcacg
actgtcattcctaaccgtggggcatggttggaatatgaaaccgatgcgaaggacattgcg
tatgtccggattgatcgcacgcggaagattcctctgaccgaattggttcgcgcattgggc
tttggctccgatcaagacattattaatatgttcggggataacgattcgttgatgctcacg
cttgaaaaagatgtgcataagaatacggatgattcccgtactgatgaagccttgaaggat
atttatgaacgtctacgtccaggcgaacctaagactgctgattcatcgcggtcacttttg
tatgcccgcttctttgacccgaagcgttatgacttagcctctgttgggcgttacaaggtg
aacaagaagctgagcctgaagacccggctattgaatcaggttttagcggaaacactggct
gatccggatacaggtgaagtccttgcccaaaaagggaccaaagtggatcgccaagtgatg
gataagctggcaccgtacttggatcgggatgatttcaagacggtcacttatcaaccttct
gatcaaggtgtgatgaccgatccgattgagctgcagagtattaaagtttactcacaggtg
accccggataaagaaattaatttgattggcaatgggcatattggcaagaaagttaagcat
attttgccagctgacgttttggcatcgatgaactacttcctgaacttgcaggagggcctt
ggcacggttgatgatattgaccacttgggtaatcgtcgtattcgttccgttggtgaatta
ttgcaaaatcagttccggatcgggctttcgcggatggaacgggttgttcgcgaacggatg
tcgattcaggacaccgcaaccgttacaccgcagcaattgatcaatattcggccagttgtc
gcttcaattaaggaattctttggtagttcccagttgtcacagttcatggatcagaccaat
ccgttgggcgaattaacccataaacggcgtctgtctgcccttggacctggtggcttgact
cgtgatcgtgcgggttatgaagttcgagatgttcattacacccattatggccggatgtgt
ccgattgaaacccctgaaggcccgaacatcgggctgattaacagcttggcttcatacgcg
gtcgttaacccatacggcttcattgaaacgccatatcgacgggtttcatgggatacgcat
aaggttaccgacaaaatcgattacctgacagctgacgaagaagataactacattgttgcg
caggcaaactcgccactaaacgatgatgggtccttcgttgatgacacggttttggcccgg
cataaagataacaatattgaaatttcaccagacaaagtcgactacatggacgtttcgcct
aagcaggttgtcgcagtcgcaaccgcctgcattccattcttggaaaacgacgactctaat
cgtgcgttgatgggtgctaacatgcagcgtcaggcggtacctttgatcaacccgcatgcc
ccgcttgtcgggaccgggatggagtacaaagccgcccatgactctggaaccgcggttttg
gctaacaatgccggtacggttgaatatgtcgatgctaagcaaatccgggtacgtcgtgaa
gacggtgccttggacacttacaaattgatgaaattcaagcgtagtaacgccggtaagaac
tacaaccaacgtccgattgttacgatcggtgaccatgtcgatgtcgatgaaatcattgct
gatggaccagccatgcaaaatggtgaattggcattggggcaaaacccaatcatcgccttc
atgacttggaacatgtacaactacgaagatgcgattgtgctgtctgaacggttggttaaa
gatgatgtttacacgtcaatccatattgaagaatatgaatcagaagcacgtgacaccaaa
cttggacctgaagaagtcacgcgtgagattccaaacgttggtgaagaagccctcaaggat
ctcgatgaattcggggttgtccgtgtcggtgccgaagttcgggatggcgacattctggtt
ggtaaagtaacgcctaagggagtcacggaattatctgccgaagaacgcctgctgcacgca
atttttggtgaaaaagcacgtgaagttcgcgacacatcgctgcgggttccgcatggtggc
ggcggtattattcaggacgtcaaaatcttcacccgtgaagctggagatgaattatctcct
ggcgtcaacatgatggtacgggtttacatcacgcagaagcggaaaattcaagttggtgac
aagatggccggtcgtcatgggaacaaagggacggtttccgtcgttgtgcctgaagaagac
atgccatacttgccagatggtaccccagtcgatatttgcttgtcgccaatgggtgtgcca
agtcgtatgaacatcgggcaggtgctggaattgcatctgggcatggctgctcgtaactta
ggcattcatgttgcaacgccagtctttgacggtgccaacgataaagacttgtgggcaacc
gttaaagaagccggcatgccatctgatgggaagtcagtcttatatgatggccgtaccgga
gaaccatttgaaaaccgggtatctgtcggtgtcatgtattacatgaagctatctcacatg
gttgatgataagatccatgcgcgttcaattggaccttacagcttagttacccagcagcct
cttggtggtaaagctcagtttggtggccagcggtttggtgaaatggaagtctgggccctt
gaagcttatggtgcagcgtataccttacaggaaatcttgacttataagtccgatgacgtt
gttggccgagttaagacctacgaagccatcgttaaaggcgatccaattccaaagcctggc
gtaccggaatcattccgtgtgcttgtcaaggaattgcaagcgctgggacttgatatgaag
gttctaggtgctgataagcaggaaatcgaattgcgcgacatggacgatgacgaagacgat
gttgtttctgtcgatgcattagcgaagttcgcagctcagcaagaagaaaagaaggcacac
gaagccgcaacccaagcaagtgacggtcagtctgccgacaatagtaccgacgataagaaa
tag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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