KEGG   Limosilactobacillus reuteri I5007: LRI_0517
Entry
LRI_0517          CDS       T02701                                 
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
lrt  Limosilactobacillus reuteri I5007
Pathway
lrt03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lrt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LRI_0517
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lrt03021]
    LRI_0517
   03400 DNA repair and recombination proteins [BR:lrt03400]
    LRI_0517
Enzymes [BR:lrt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LRI_0517
Transcription machinery [BR:lrt03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LRI_0517
DNA repair and recombination proteins [BR:lrt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LRI_0517
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD DUF961 SpoIVA_ATPase HHH_5
Other DBs
NCBI-ProteinID: AGN98726
UniProt: R9WFD1
Position
524408..525352
AA seq 314 aa
MIEFEKPNIHKVEETDNYGKFVVEPLERGYGTTLGNSLRRVLIASLPGAAITSMQIDGVL
HEFSTVEGVTEDVTQIILNLKKVSLKLDSEDQKNLELDVKGPAEVTASDIQGDNEVTILN
PDLHIATVADGAELHIKLTADKGRGYLSANDNKARMDDLAIGVLPIDSIYTPIERVNYTV
ENARVGQRNDYDKLTLDVWTDGSLTPTEAVSLGAKILTEHLAMFVDLTETAQNAQVMVEK
EETHKEKMLEMTIEELDLSVRSYNCLKRAGINTVKELTDRTVSDMMNVRNLGQKSLEEIK
LKLNDLGVSFRQDD
NT seq 945 nt   +upstreamnt  +downstreamnt
atgatcgaatttgaaaagccaaatattcacaaagttgaagaaacagataactacggtaaa
tttgtcgtagaaccacttgagcgcggttatggaaccactctcggtaactcgttaagacgt
gtattaattgcatctttgccaggtgcagcgattacgagtatgcaaattgatggtgtttta
catgaatttagcactgttgaaggtgtaactgaggatgttacgcagattatcctaaatcta
aagaaagtttctttgaagcttgattcagaggatcaaaagaatcttgaattagatgttaaa
ggacctgctgaagtaactgcaagtgatatccagggtgataatgaagttacaatcttaaat
cctgatctgcatattgcaactgttgctgatggcgcagaattacacatcaagttaactgct
gataagggtcgcggttacctttctgctaacgataataaggcccggatggatgatttagca
attggtgttttaccgattgattccatctataccccaattgaacgtgtaaattacactgtt
gaaaatgcacgggttggtcagcgtaacgattatgataagttgacgctggatgtttggact
gatggttcattaacaccaactgaagcagttagtctaggtgcgaagattttgactgaacac
ttagctatgtttgttgatttaacagaaacagctcaaaatgctcaagtgatggttgaaaaa
gaagaaacacacaaagagaaaatgcttgaaatgactattgaagagcttgatctctctgta
cgttcttacaattgtttgaagcgagctggtatcaatactgttaaggaattaactgatcga
acagtgtctgatatgatgaatgttcggaacttaggacaaaagtcgttagaagaaattaaa
cttaagttaaatgatcttggtgtttcatttcgccaagacgactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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