KEGG   Limosilactobacillus reuteri SD2112: HMPREF0538_20605
Entry
HMPREF0538_20605  CDS       T01551                                 
Symbol
clpC
Name
(GenBank) negative regulator of genetic competence ClpC/MecB
  KO
K03696  ATP-dependent Clp protease ATP-binding subunit ClpC
Organism
lru  Limosilactobacillus reuteri SD2112
Brite
KEGG Orthology (KO) [BR:lru00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03110 Chaperones and folding catalysts [BR:lru03110]
    HMPREF0538_20605 (clpC)
Chaperones and folding catalysts [BR:lru03110]
 Heat shock proteins
  HSP100
   HMPREF0538_20605 (clpC)
SSDB
Motif
Pfam: AAA_2 AAA_lid_9 ClpB_D2-small AAA Clp_N AAA_5 AAA_22 Sigma54_activat AAA_16 nSTAND3 AAA_18 UVR ATPase_2 AAA_14 Zeta_toxin RuvB_N IstB_IS21 AAA_7 RNA_helicase TniB AAA_28 AAA_25 NACHT RsgA_GTPase DNA_pol3_delta2 ABC_tran Torsin Ubiquitin_5 KTI12 AAA_23
Other DBs
NCBI-ProteinID: AEI56817
UniProt: F8DN98
Position
complement(587123..589615)
AA seq 830 aa
MDNMFTPSAKHVLAIAQEQAKYFKHQAVGTEHLLLALSMDKDGIANKIFEQFSITNDDIR
EEIERLIGYGTMENLGASDYLPYSPKAKQVLSLAGKEAQQMHALKIGTEHLLLALIADES
VLSSRILYSLDVVPRQMRKVILRRLGIADSQQRNPNRQSSRRRIQQTGTPTLDKLARDMT
ELARNGQLDPVIGRNKEVKRVEQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRMVDGKVP
AELANKRLMMLDMGSLVAGTKYRGEFEDRLKKVIDEIQNDGHVILFIDELHTLIGAGGAE
GAIDASNILKPALARGELQTIGATTLDEYQKYIESDAALERRFATVQVDEPTTDQTLQIL
RGLRPKYEEHHHAKITDEALEEAVKLSDRYISDRFLPDKAIDLIDESAAMVRIDAEDKKN
HQPSLESQLEDLRTQKEEAIDNQDFDRAATLRQQELALKDKIDRKKQRTQQKDSHNYKLK
VTGENIAQVVAEWTGVPLTQLKKSESERLVNLEKVLHQRVIGQDEAVTVVAKAIRRARSG
LKDPSRPIGSFMFLGPTGVGKTELAKALAAAMFGSEDNMIRIDMSEYMEKYSTSRLIGAA
PGYVGYDEGGQLTEKVRQHPYSVVLLDEAEKAHPDVFNLLLQVLDDGYLTDAKGRRVDFR
NTIIIMTSNLGATQLQDEKEVGFGAKDMSQDYNAMAAAIKQQMRLYFRPEFLNRIDETII
FHSLQKKELHQIVKLMVNDLNKRVSEQGINLKVTPAAIDVIAKLGYNPAYGARPLRRALQ
DHVEDDLSTGLLSGEINVGDDVTVGAHHGKITFKVKKPDEDKAVELKLNR
NT seq 2493 nt   +upstreamnt  +downstreamnt
atggataatatgttcacgccaagtgcaaagcatgttctagcaattgcacaagaacaagca
aaatactttaaacaccaagcagtagggactgaacaccttctgcttgccctctcaatggat
aaagatgggattgctaacaaaatatttgaacaattttctattacgaacgatgatattcgt
gaagaaattgaacgcttaattggctatggaacgatggaaaatctgggagcttcagattat
ctcccatactcaccaaaagcaaagcaagtattatcgttagcaggtaaagaagcccaacaa
atgcatgcattgaagattggcactgaacacttattattagccttaatcgctgatgaaagt
gttctatcttcacggattttatatagtctagatgttgtgccacgacagatgagaaaagta
attttacggcggttagggattgctgatagtcagcaacgcaatcctaatcgtcaatcatct
cgtcgacggattcagcaaactggtacaccaacattagataaactagctcgtgatatgaca
gaacttgctcggaatggtcagcttgatcctgtaattggtcgaaataaggaagttaaacgt
gtggaacagattcttagtcgtcgtaccaagaataacccagttttgattggagaaccggga
gtagggaagacggcaattgctgaaggacttgctcagcggatggttgatggtaaggttcca
gctgaattggctaataaacgtttgatgatgcttgatatgggatcattagttgcaggtacc
aagtatcgaggagaatttgaagatcgtcttaaaaaagtaattgatgagattcaaaacgac
gggcatgtgattctttttattgatgaactccataccttaattggtgctggtggtgctgaa
ggtgcaattgatgcctccaatattttgaaaccggccttagcgcgaggcgagttgcaaaca
attggtgctactacgcttgatgaatatcagaaatatatagaatcggatgcagcacttgaa
cgacgctttgccactgttcaagttgatgagccgactactgaccaaactctacaaatcctg
cgaggactacgaccaaagtatgaggagcaccatcatgctaaaattactgatgaagcgcta
gaagaagcagttaaattgtcagatcgttatatttcggatcgattcttgccagataaagca
attgatcttattgatgaatcggcagctatggttcgaattgatgctgaagataagaaaaat
catcagccttcactagaaagtcagttagaagatttgcgaacccaaaaagaagaagcaatt
gataatcaagactttgatcgtgcagctactcttcgtcaacaggagttagcactaaaagat
aagattgaccgtaaaaaacaacgcactcaacaaaaagattctcataactacaaattgaaa
gtaactggtgaaaacattgcacaagttgttgctgaatggacaggagttcctttaactcaa
ttgaagaagagtgaaagtgaacgattggttaacttggaaaaggttctgcatcaacgagta
attggtcaagatgaagcagttaccgtagtcgctaaggcaattcggcgtgcacgaagcggt
cttaaggatcctagtcggccgattggttcttttatgtttttaggaccgaccggggtagga
aaaacagagcttgccaaggcattagctgctgcaatgtttggctcggaagataatatgatc
cggattgatatgtccgaatatatggaaaaatatagtactagtcgcttgattggtgccgct
ccaggatatgtcggttatgacgagggtggccaactaactgaaaaagtacggcaacatcca
tattcagttgtcttattagatgaagctgaaaaggcacatccggatgtatttaatttatta
cttcaagttttagatgatggttacttaactgatgcaaaaggtcggcgcgttgattttaga
aataccattattattatgacttctaaccttggagcaactcagcttcaggatgaaaaagaa
gttggttttggggcaaaagatatgtcacaagactataatgcgatggcagcggcgattaag
caacaaatgaggttatacttccgcccagaattccttaatcggattgatgaaacgattatc
ttccattcattacaaaagaaagagcttcatcaaattgttaaactcatggttaatgattta
aataaacgggtaagtgagcaaggcattaacttgaaagttacgcctgctgcaattgatgta
attgcaaagcttggttacaatcctgcttatggagctcgtccgcttcgtcgtgccttacaa
gatcatgttgaagatgatttgagtactggactacttagtggtgaaatcaatgttggagat
gacgtaacagtaggtgcgcatcacggtaaaattacttttaaagtaaaaaagccagatgaa
gataaagctgttgaattaaaattgaatagataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (30)   
   Pfam (30)   
All databases (37)   

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