KEGG   Listeria seeligeri: lse_1730
Entry
lse_1730          CDS       T01184                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lsg  Listeria seeligeri
Pathway
lsg03030  DNA replication
lsg03410  Base excision repair
lsg03420  Nucleotide excision repair
lsg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lsg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    lse_1730 (ligA)
   03410 Base excision repair
    lse_1730 (ligA)
   03420 Nucleotide excision repair
    lse_1730 (ligA)
   03430 Mismatch repair
    lse_1730 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lsg03032]
    lse_1730 (ligA)
   03400 DNA repair and recombination proteins [BR:lsg03400]
    lse_1730 (ligA)
Enzymes [BR:lsg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     lse_1730 (ligA)
DNA replication proteins [BR:lsg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     lse_1730 (ligA)
DNA repair and recombination proteins [BR:lsg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     lse_1730 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     lse_1730 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     lse_1730 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      lse_1730 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 RNA_pol_A_CTD zf-NADH-PPase zf-IS66
Other DBs
NCBI-ProteinID: CBH27881
Position
complement(1777117..1779132)
AA seq 671 aa
MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLQIEAAHPEWVTPESPSKR
VGGEVLEGFQKVAHDTPMLSLANAFNKGDLADFDRRIRDKVGEDIAYMCELKIDGLAVSL
QYEKGKYKQGATRGDGTTGEDITANLRTIRSIPMKLQKDYSIEVRGEAFMPKRSFQKLNE
IREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFLYAVADFGEMGVTTHSDGLDMLE
TLGLKVNKERRLCANLEEVYAYIDEWTEKRAGLAYDIDGIVLKLNDLEQQRQMGTTAKSP
RWSIAYKFPAEEVPTKLLDIELNIGRTGVVTPTAVLEPVRVAGTTVSRASLHNEDLITEK
DIRIGDTVLIKKAGDIIPEVIKSITEERTGEEEPFHMPKNCPTCGSELVRLEEEVALRCI
NPKCPAQIKEGLIHFVSRNAMNIDGLGEKVIIQLFTHHLIKDVADLFFLSKEKLLELERM
GEKSVTNLLASIEQSKQNSLEKLLFGLGIRHVGAKAAKSLAIHFETMDNLKLADKETLTS
INDIGEKMADSIVTYFANEEVHDLLDELKRANVNMTYTGPKLENMSEEELIFAGKTVVLT
GKLEQLTRNDAKSLIESLGGNVSGSVSKKTDVVVAGSDAGSKLAKAEELAIPIWSENDLI
EYLPDEGGLNK
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggctgataaaaaacggtatgaagagctaattaacatacttgatcaatacagctatgat
tattatgtgattgataacccgacagtagaagatgccgaatacgatcaaaaaatgcaagaa
ttacttcaaatcgaagcagcgcatccggaatgggttacacctgaatctccgtcaaaacga
gttggtggtgaagtgttagaaggttttcaaaaagtagcgcatgacacgccgatgttaagc
ctcgccaatgcatttaataaaggcgacctagctgattttgatcggcgcatccgggataaa
gtaggcgaagatatcgcttatatgtgcgaactgaaaattgatggacttgctgtatcactt
caatacgaaaaaggtaaatataagcaaggggcaacacgtggtgacggaacaactggcgaa
gatattaccgcaaatctacgtacaattcgctccattccaatgaaattacaaaaagactat
tccattgaagttcgcggcgaggctttcatgccaaaacgctctttccaaaaactaaatgaa
attcgcgaagaagaaggccagatgctattcgcaaatccgcgaaatgcagcggctggatca
ttgcgtcaattagataccaaaattgccgcatctagaaatttagatatcttcctatatgct
gtagctgattttggcgaaatgggtgttacaactcatagtgacggccttgatatgctagaa
acacttggtttaaaagtgaataaagagcgcagactttgtgctaatttggaggaagtttac
gcttatattgatgaatggaccgaaaaaagagcaggtttagcatatgatattgatggtatt
gtgttgaaactaaatgatctagagcaacagcgccaaatggggacaaccgctaagtcacca
cgctggtctatcgcttacaagtttccagcagaagaagtaccaaccaaattacttgatatt
gaactaaacattggtagaacaggtgttgtaactcccactgctgtgttagaaccagttcga
gtggctggaacaaccgttagccgggcctctctccataacgaagacctaataacagaaaaa
gatattcgcattggggataccgttttaataaaaaaagcgggagacatcattccagaagtt
attaaaagtattaccgaagaaagaactggcgaagaagaaccttttcatatgccaaaaaac
tgtcccacttgtgggagcgaacttgttcgtttagaagaagaagtggcgctcaggtgtatc
aatccgaaatgtccagctcaaatcaaagaaggcctaattcactttgtttctcgaaatgca
atgaatattgatggactcggtgaaaaagtaataattcaactgtttacacaccatttaatt
aaagatgtagcagatttgtttttcctttcgaaagagaaactgttagaattagaaagaatg
ggagaaaagtcagtaacgaatttactcgcatcaattgaacaaagtaaacaaaactcgcta
gaaaaattattatttggtttaggaattcgtcacgttggcgccaaagcagccaaatcactt
gcgattcactttgaaacaatggataatttgaaactagcggataaagaaacactcacaagc
attaatgatatcggcgaaaaaatggcagacagcatcgtaacttattttgcgaatgaagaa
gttcatgacttactagatgaactaaaaagggctaacgtcaatatgacttacacaggacca
aaactagaaaatatgtccgaagaagaacttatttttgcagggaaaacagtcgtattaact
gggaaattagaacagttaacgcggaatgatgcaaaatcgttaattgagtcacttggcgga
aacgtttctgggagcgtcagtaaaaagacggatgttgttgtagctggcagtgacgctggt
tctaaactcgctaaagcagaagaactagcaattcctatttggtccgaaaacgacttaata
gagtacttaccagacgaaggtggattaaacaaatga

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