KEGG   Fructilactobacillus sanfranciscensis: LSA_04200
Entry
LSA_04200         CDS       T01627                                 
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase cshA
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
lsn  Fructilactobacillus sanfranciscensis
Pathway
lsn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lsn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LSA_04200 (cshA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsn03019]
    LSA_04200 (cshA)
   03009 Ribosome biogenesis [BR:lsn03009]
    LSA_04200 (cshA)
Enzymes [BR:lsn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     LSA_04200 (cshA)
Messenger RNA biogenesis [BR:lsn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     LSA_04200 (cshA)
Ribosome biogenesis [BR:lsn03009]
 Prokaryotic type
  rRNA helicases
   LSA_04200 (cshA)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22 CMS1 Helicase_RecD
Other DBs
NCBI-ProteinID: AEN98868
UniProt: G2KU53
Position
405137..406654
AA seq 505 aa
MCCIYGDVSIGGTHLNFKDLGLSDSLLKAVADNGYAEPTAIQTETIPLTLKGEDVIGQAQ
TGTGKTAAFALPILQGIDVNDPNVQALVISPTRELAIQTQKEIQKLGRGEGVRAQVVYGG
SDIRKQIYDLKKKPQIIVGTPGRLLDHIKRRTLKLEHVKFLVLDEADEMLNMGFLEDIES
IIKNTPSDRQTMLFSATMPDPIKRVGVQFMTDPKQIKVKSKELTTDLVDQYYVKVKDNEK
FETMTRLFDVEQPKVTIVFCRTKRRVDEVAKGLIARGYKAAGLHGDLTQSRRTQIMNEFK
RDQINYLVATDVAARGIDVSGVTHVYNFDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPN
EMSYLRLVEKLTKVRMLPLKPPTEDEALAGQMKFAIEDVDKLVKRTNTEKYEDVANTLLE
NHEAIDLVAALLNEMSRDQVKVHITPERPLKGHGGGRGRSRGGYRGNNSHSRGGYRGSRD
NNSRGGHDRRNSSGRSNKFVIKNKH
NT seq 1518 nt   +upstreamnt  +downstreamnt
atttgttgtatttacggtgatgtttcaataggaggaacacatttgaattttaaagattta
gggctatcagatagtctattaaaagccgtagcagataacggctatgcagaaccaactgct
atccaaacagaaacaattccattgacccttaaaggtgaagatgtgattggacaagcacaa
actggtactggaaaaactgctgcatttgcattaccaattctacaaggaattgacgttaat
gacccaaatgtgcaagcattagtaatttcaccaactcgtgaattagcgattcaaactcaa
aaagaaattcaaaagttgggtcgtggcgaaggtgtccgtgcacaagttgtttacggtgga
tcagacattcgtaaacaaatttacgatttaaagaagaaaccacaaattattgttggaact
cctggtcgtttacttgatcacattaaacgtcgtactcttaaactagaacatgtaaaattc
ttagttttagatgaagcagatgaaatgttaaacatgggattcttagaagatatcgaaagt
atcatcaagaacaccccctcagatcgtcaaacaatgttattctcagccactatgcctgat
ccaatcaagcgagttggggtacaatttatgactgatcctaaacaaattaaagttaaatct
aaagaattaacaactgatttagttgatcaatattacgtaaaagttaaagataacgaaaag
tttgaaacaatgactcgtttattcgatgttgaacaacctaaagtaaccatcgttttctgt
cggactaaacgtcgtgttgatgaagttgctaaaggtttgattgctcgcggttataaagct
gctggtcttcatggtgatttaactcaaagtcgtcgtactcaaattatgaacgaatttaaa
cgtgatcaaatcaattatcttgttgcaactgatgttgctgctcgtggaattgatgtttca
ggtgttacccatgtttataactttgatattcctcaagacccagaaagttatgttcatcgt
attggacgtactggtcgtgccggacatcatggtacttcagtaacctttgtaactccaaac
gaaatgagctaccttcgtttagttgaaaaacttactaaggttcggatgttaccattaaag
ccacctactgaagatgaagctttagctggtcaaatgaaatttgccattgaagatgttgat
aagttggttaaacggactaataccgaaaaatatgaagacgttgcaaatacattgctagaa
aatcatgaagcaattgatttagtagctgctttgttaaacgaaatgtcacgtgatcaagtt
aaggttcatatcactccagaacgtccacttaaaggacatggtggtggtcgtggccgtagt
cgcggagggtaccgtggtaacaacagtcatagccgtggtggatatcgtggtagtcgcgat
aacaatagtcgtggtggacatgatcgtcgtaacagctctggtcgtagtaacaaattcgta
attaaaaataaacattaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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