KEGG   Lactuca sativa (garden lettuce): 111904112
Entry
111904112         CDS       T05352                                 
Name
(RefSeq) uncharacterized protein LOC111904112
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111904112
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111904112
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111904112
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     111904112
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT WEF-hand
Other DBs
NCBI-GeneID: 111904112
NCBI-ProteinID: XP_023755659
Position
7:complement(12164744..12178954)
AA seq 2417 aa
MIPLAQRFSTEIRLLFESLNESNSDSVLRELSQYVDYGLEGSILLLETCFDHFNVYERDL
KSSHLEPVVASLFRKLLEKPQFSTVFQVSVRPTAITEEFLDNLSVALQLSSYEKLGFGLS
LTDSENNDIRIAGRNFCTRQIEELCATTSLHNADYVQDILLFLNKSEALSKHVDSFMQLL
SLVQFDKDSEFIVAPLLSDELQESKFMRKLDFLNDGTDSEFEAILAEMEKHMNMADLMKE
LGYNSTSDVSLCKDLLSSFSPLNEITVAMILGTIVRSDSSLQDQENAFSTFCSALGRGSL
PDMSLLSSWNTEVLIESIKQLAPGINWTTVIENLDHEGFYIPDEAAFSLLISCYRLASQD
PFPLSAVCGNVWKNTEGQLSFLKYAVSVPPEVFTFAHCERQVAYVDAVSTPKFQSGYANH
AWLCLDLLEVLCQLAERGLAKSVRLLLEYPLKHCPEVLLVGMAHVNTPYNVLQNEVSLAV
LPVILKDPSVGGILLHLWHVNRSFFLRALSDALNMDQDNIHRVLDLCQEIKIISPVLDMV
PMSLGIKLAALASRKELIDLEKWLSANLSTYRDAFFEECLRFLKEVEFGVQESSNRLHSP
GNIWTIYAETASVFFKVLQSHTGLLTSNQLIKEMERLYLKSPNNSSRMKNNGGQESSTSE
VYGDDVEAEANSYFQQMFSGQLTIDAMIQMLARFKESSDKREQQIFECMIANLFEEYKFF
NRYPDRQLKLAAIVFGLLIKNQLVTHLTLGIALRAVLDALRKPADSKMFVFGTKALEKFV
DRLIEWPQYCQHILQISHLRATHSELVAFIERALARISSGHLDSDAGHNPASDQHHNSIP
QPNIEMAAGSSFSLIGSSGAQLGSQMSSPIQLQQRNQSYLEERHRASVTSSNYMKPNLPT
TGQMSVATANDPVSIQKPPSVVSSSAALASSPAFVRPSRSVTSARFGSALNIETLVAAAE
RRETPIEAPPSETQDKISFIINNLSAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIE
PNFHDLYLKFLEKASSRPLTREIVQATYENCKVLLGSELIKSSSEERSLLKNLGGWLGKI
TIGRNHVLRAKEIDPKGLIIEAYEKGLMIAVIPFTSKILEACQNSLAYTPPNPWTMGILG
LLAEIYAMPNLKMNLKFEIEVLFKNLNVDLKEVSPSSLLMDKVREVEGNPDFSNKDVGST
QQQPMVGEVKSSMISTLNQVDLPVEVASSSHPGGHSRILSQYAAPLHLPSATLSEDEKMA
ALGLSDQLPSAQGLLQAQLPFSVGQIPASNIDQQVIVNPKLQALGLHMHFQSVLPMSMDR
AIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDESRIHSAAHLMVASLAGSLAHVTCKE
PLRGSISSQLRNNIGTTVNITSELLEHAVQLVTNDNLDLGCALIEQAATEKAVQTIDGEL
APQLAIRRKHREGVGPAFFDANLYTQGHVGVLPEALRPKPGRLSHSQQRVYEDFVRLPWQ
NQSNQSSNAVPLGPSAPPGSGALHRGYGSASGNLNPGIFSSSLGNSGMNAVAHSLDSEDM
EPSSVKLLSGSSGHAGMAGGIGPHNFENEAVLSSFSSVSAPELHIPDSSNISKESGVYAQ
PLPSPSASDRVISTTSEPSLTTGDALDKYRIISEKLESLIANDAKEAEVQSVIGEVPVVI
LRCISRDEAALAVAQKVFKGLYENAANTAHVGAHLAMLASIRDASKLVVKELTSWVIYSD
EDRKFNKDITIGLIRRELLNLAEYNVHMAKLLDAGKNKVATEFAISLIQTLVANDARVIS
ELHNLVDALAKLATRPDAPEALQQLVEVARNPSASSSSGLPAGKDDFVRQQKDKKVASHL
VAGRDEMSALESSEPDPAGFHDQVSLLFAEWYRIYEHPNDQMSARFVLQLQQNGLLKADD
TSDRFFRRLLEIAVSHCISSEVINSSPVQAPQQAQTLSFLAIDMYASLIFSILKFSSVDH
GVSKLSLLSKVLAVTVRFIQKDAEEKKTSFNPRPYFRLFIDWLLDLSTLDPVFEGANFQV
LTALATSFHALQPLKVPAFSFVWLELVSHRSFMPKLLSGNAQKGWPYFQRLLVDLFQFME
PFLRNAELGEPVRFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDIIPPSCIQMRNIVLSAF
PRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKTKQMKNDVDEYLKTRPQGTSFLS
ELKQKLLLSPSEAARAGTRYNVPLMNSLVLYVGMQAIQQLQARTPHGQSMASNASLAIFL
VGAALDIFQTLILELETEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFSESNQEAIQEQ
ITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSCGGP
KPVDDNVVAGGISDTMH
NT seq 7254 nt   +upstreamnt  +downstreamnt
atgattccgttggcgcaaagattctcaactgaaattcggctgttgttcgagagtttgaac
gaatccaattccgactccgttcttcgcgaactctctcagtatgttgattatggattggag
ggaagcattctgcttctagagacatgctttgaccacttcaatgtttatgaaagggacttg
aagagtagtcatctggaaccagtagttgcttcactttttagaaagttacttgaaaagccg
cagtttagtaccgtattccaagtgtcagttaggcctacagcaatcactgaagaatttttg
gataatctatccgttgcactacagttatcatcatatgagaaacttggatttggtctttcc
ttgacagattcggaaaataatgacatcagaatagctggaaggaacttttgtacgcgacaa
attgaggaattatgtgctaccacctccttgcataatgctgactatgttcaagacatattg
ctgtttcttaataaatccgaagcactttctaaacatgtggattcttttatgcaattgtta
tccttggttcagtttgataaggattcagagtttatcgtggcacctctcctttctgatgag
ctacaagaatccaagtttatgaggaaactggattttctcaatgatggcactgacagtgaa
ttcgaagctatcctagcagaaatggagaagcatatgaacatggctgatttgatgaaagaa
ttgggctacaattccacatcagatgtatcactttgcaaggatttgttatcatcattctca
cccctcaatgaaatcactgttgctatgatactagggacaatagtccgctctgattccagt
cttcaggaccaagaaaatgcattttcaacattttgttctgctcttggtagagggagtctt
cctgatatgtccttgttgagttcttggaacactgaagtccttatagaatcaatcaagcag
cttgcgcctggaatcaactggaccactgtaattgagaaccttgatcacgagggtttctat
atccctgatgaagcagcattttcactattgatttcctgctatagactagcatcccaggat
ccgtttccattatctgctgtttgtggcaatgtttggaaaaacaccgaggggcagttgtct
tttttgaagtatgctgtttctgtcccacctgaagtattcacatttgcacactgtgaaaga
caagtggcatatgttgatgcagtcagtactcccaagtttcaatctgggtatgcaaatcat
gcatggttatgccttgatcttttggaggttttatgccagctggctgaaagaggccttgca
aagtctgttcgattgctgcttgaataccctcttaagcattgccctgaagtgttattagtt
gggatggcccatgttaatacaccatataatgtcctgcaaaatgaagtttctttggctgtt
cttcctgtgatacttaaagacccttctgttggtggcattttgctccatctttggcacgtt
aaccgttcctttttcttgagagctttaagcgatgcactcaacatggatcaagataatata
cacagagtcttggatttatgccaggagataaagattatatctcccgtattggatatggta
cctatgtctttgggtattaagctggctgccctggcttctagaaaagaactcatagatctg
gaaaagtggttgagtgcaaatttaagtacttacagggatgctttctttgaggaatgcctc
agattcctgaaggaggtggagtttggtgttcaggaatcttccaatcggttgcatagccct
ggtaacatttggactatttatgcagagacagcttctgtgttctttaaggttcttcaatcg
catacaggcttgcttacttctaaccaacttattaaagaaatggaaagattatatctgaag
tctccaaacaacagttcaaggatgaagaacaatggtggtcaagagtcgtcaacatctgaa
gtatatggagatgatgtagaggcagaagccaattcttatttccaacaaatgttctctggt
cagctgactattgatgcaatgatccaaatgcttgcccgatttaaagaatcttctgataaa
agggaacaacaaatatttgagtgcatgattgcaaacttgtttgaagagtacaagtttttc
aacagataccctgatagacaacttaagcttgctgctattgtctttggattgcttattaag
aatcaacttgtgacccatctgacacttggaattgcattacgtgctgttttggatgcattg
cgcaaacctgcagattccaaaatgtttgtttttggtacaaaggctttggagaagtttgtg
gatcgactgattgagtggcctcaatactgccaacatatcttgcagatatcacatctgcgt
gctactcattcagagcttgttgctttcattgaaagggcgcttgcaagaatttcatcaggc
cacctggattcagatgcaggacacaatcctgcttctgaccaacaccataattctatccca
caaccaaacattgagatggcggcgggatcatctttctctttgattggatctagtggtgca
caacttggttctcaaatgtcttctccaatacaacttcaacagaggaatcagagttattta
gaagagagacacagagcctctgtaacttcatccaattatatgaagccaaacttacctacc
acaggacaaatgtcagttgctacagcaaacgatcctgttagtatccagaagccaccgagt
gtagttagttcttcagcagcattggcttcatctcctgcttttgttcgtccatctagatct
gttacttcagcaagatttggttctgcattaaatatcgaaacacttgttgccgctgctgaa
cgcagagaaacacccatagaggccccaccatctgaaactcaagacaaaatctcatttatc
atcaataatttatcggctgccaatattgaagctaaagcaaaggaattcacagaaattttg
aaagaacagtactatccttggtttgcacagtatatggtcatgaaaagagcaagtatcgaa
ccaaattttcatgacttgtacttgaagttccttgagaaagccagctcaagacctctaacc
agagagattgttcaagctacctatgaaaattgcaaggttcttttaggatctgaactcata
aaatccagttctgaagagcgttctttgctgaagaatcttggaggctggttaggaaagatt
acaattggcagaaaccatgttttgcgtgctaaagaaatcgatccaaagggcttaattatt
gaggcgtatgagaagggtttgatgattgcagtgattccatttacctccaagatcttagag
gcatgccaaaatagtctagcgtatacacctcctaatccttggaccatgggaattcttgga
ttacttgctgaaatttatgcaatgccgaatctcaaaatgaatctcaagtttgaaattgag
gttttgttcaagaatctcaatgttgatttaaaggaagtaagcccatcctcccttcttatg
gacaaagtgagagaagttgaaggaaaccctgatttttccaacaaagatgttgggtcaact
caacaacaaccaatggttggagaagttaaatccagcatgatttctactctaaatcaagtc
gatttaccggttgaagttgccagctcatcacatccgggtggtcattcgcgtattctatct
cagtatgctgctcctctccatcttccttctgcaactttaagtgaagatgaaaagatggca
gctttaggcttgtctgatcagcttccatctgctcaaggacttctacaagcacaattgcca
ttttcagttggtcagataccagcatcaaatatcgaccaacaagttattgttaatcctaag
ctccaagctctgggcttgcatatgcactttcagagcgtgcttccaatgtctatggatcga
gctatcaaagaaatagtttccagcattgtgcagcgtagcgtctctatagcaactcaaaca
acaaaggaacttgtcttaaaggactatgctatggagtctgatgagagccggatacacagt
gcagctcatttaatggttgcaagtttggctggaagtttagcccatgtgacatgcaaggaa
cctcttcgtggttcgatatcaagtcagctgagaaacaatattgggactactgtaaatatc
accagtgaactgcttgaacatgcagttcagcttgttactaatgacaacctcgacttggga
tgtgctttgattgaacaggctgcaacagaaaaggctgtacaaaccatagatggtgaactt
gcaccacaacttgcgataagaaggaaacatagagaaggggtgggcccagccttttttgat
gcaaacctgtatacacaaggtcatgttggtgttcttccggaagctttgcgtcctaaacct
ggtcgattgtcccattcccaacagcgagtttatgaggattttgttcgattaccatggcaa
aatcagtccaatcaaagctcaaacgctgtacctcttggtccttctgctcctcctgggagt
ggtgcactacatcgtggatatggctcagcctcagggaatctaaaccctggcatcttctca
tctagtcttggaaactctggtatgaatgcagttgcacactccttggattcagaagatatg
gagcctagttctgtcaaactcctcagtggttcctcggggcatgctgggatggctggtgga
attggtccacataattttgagaatgaagctgttctttcttcattttcgtcagtgtcagct
cctgaattgcacataccagattcttccaacatttccaaagaatctggagtctatgcgcag
cctttaccttcgccttcagcttcagatcgtgtcataagtaccacttctgaaccttcattg
actactggtgatgcattggataaataccggattatctcagaaaagctggaatctctcata
gcaaatgatgctaaagaagctgaagttcagtctgttatcggcgaggttcctgtggtcatt
cttagatgcattagtcgcgatgaggctgcattggctgtggctcagaaggtcttcaaaggc
ttgtatgaaaatgcagcaaacacagcacatgttggtgctcatcttgccatgttagcttca
atccgagatgctagcaagcttgtggtgaaggaactgaccagttgggtgatatattcagat
gaagataggaagttcaacaaagatattactattggcttaattcgcagagagttgttgaac
cttgctgaatataatgttcatatggcaaagcttcttgatgctggaaagaacaaggtggca
acagagtttgcaatttctctcatccaaacattggttgctaatgatgcaagagtgatatct
gaacttcataatcttgtggatgcgttggcgaagcttgcaacaaggcctgatgctcctgag
gcgctgcaacaacttgtggaagttgctaggaacccatcagcttcttcctcctctggactt
cctgctgggaaggatgattttgtcagacagcaaaaagacaaaaaggtggctagtcatctg
gtagcaggcagggatgaaatgagtgctttggaatcttctgaacccgatcctgctggtttc
catgatcaggtttccctgttatttgccgagtggtatcggatatatgaacaccctaatgat
cagatgtctgctcggtttgttctacaacttcagcaaaatgggttgctaaaagcagacgat
acatctgaccgcttctttcgccgtctcttggaaattgctgtatcacactgtatctcttct
gaggtgatcaattctagccctgtccaagctcctcaacaagcacagaccttatctttcctt
gccattgatatgtacgcatcactcatcttttcgatactcaagttctcctctgttgaccat
ggagtaagcaagctgtctcttctgtcaaaggtgttagccgtgactgtgagattcattcaa
aaggatgcagaggagaagaaaacttcattcaaccccagaccgtatttcaggttattcatt
gattggctgcttgacctcagtacccttgatccggtttttgaaggtgcaaactttcaggtt
ctgacagctctagcaacctccttccatgccctgcagcctctcaaagttcctgcattcagc
tttgtatggcttgagctagtgagtcacagaagcttcatgccaaaactactgagtggaaac
gctcaaaagggttggccatatttccaacgtttactggttgacttattccagttcatggaa
cctttcttgaggaatgctgaacttggcgagccggttcgttttctatacaagggcacactg
agagttctgttggtgttacttcatgatttcccagagtttctctgtgattatcatttcagt
ttctgtgatatcattcctccaagttgcattcagatgagaaatatagtgctcagtgctttc
cctcgcaacatgagactaccagacccttcaactcccaacttaaagattgatctgctagct
gagatcagtcagtcacctcgcattctgtcggaagttgatgcagctctgaaaaccaagcaa
atgaaaaatgacgtggatgagtatctaaagacaaggccacaagggacttcatttctgtct
gaactaaagcagaaactgcttctttcaccaagtgaggcagcaagggcaggaacacgatac
aatgtgccattaatgaattcccttgttctttatgttggaatgcaggcaatccagcagttg
caggcaagaacgccacacggacaatcgatggcgagcaatgcttcgctggccatcttcttg
gtgggggccgctctggacatctttcaaacattgatattggagcttgagacagaagggcgc
tacctctttttgaatgcagttgcaaatcagttgagatatcccaacaaccatacgcattac
ttctccttcatccttctctacttgttctccgaatcaaatcaggaggcaatccaggaacag
ataacgagagttctgttggagcggttgatagttaacaggccacacccttgggggcttctg
atcaccttcattgagcttatcaagaatccacgatacaacttttggagccgatctttcact
aggtgtgcaccggagattgagaagctatttgaatcggtgtcgagatcatgtggtgggccg
aaaccggtggatgataatgtggttgctggagggatatctgataccatgcactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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