KEGG   Lutibacter profundi: Lupro_00885
Entry
Lupro_00885       CDS       T04235                                 
Name
(GenBank) hypothetical protein
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
lut  Lutibacter profundi
Pathway
lut03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lut00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Lupro_00885
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lut03019]
    Lupro_00885
   03400 DNA repair and recombination proteins [BR:lut03400]
    Lupro_00885
Enzymes [BR:lut01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Lupro_00885
Messenger RNA biogenesis [BR:lut03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Lupro_00885
DNA repair and recombination proteins [BR:lut03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Lupro_00885
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind HTH_5 HTH_36 AAA_22 Helicase_C_2
Other DBs
NCBI-ProteinID: AMC09897
UniProt: A0A109RMS1
Position
complement(188475..190370)
AA seq 631 aa
MSTPLKILKNYWGYSQFKYPQKKIIESTLARRNSIVLLPTGGGKSLCYQIPTMLLDGVCI
VISPLIALIQDQVNSLKKKNIKAIALTSQLNQDQIITAFDNLRFGDFKFLYLSPEKLQSA
LIQEKIKQLKVAIIAIDEAHCISEWGHDFRPSYLQLKILKELQPNAIFMALTATATQKVL
DDIQQNLEIDNALLFKKSFQRNNLHYNVITTEDIYGKTLQIVRKINASLIIYTNSRKQTK
EVCDFLLKNNFKSSFYHGGLSSTQKNIAYTKWMKNETPIMVATNAFGMGIDKPNVRAVIH
INIPNSLENFIQEAGRAGRDDKTAYSILLTNKSNLFDTSTRFIANLASTKIVKNIYHHLN
QYYAIAIGETPSKLFDFSLQEFCHTYTLKLLQTYNAIKVLERENILLLDENYNKKSTLKF
LVSNSKVFDYINLKPSKSKLIKLILRSYGGIFDHYTIINEYTLSKKLNCTKNNIVKQLNE
LHTNGIVNYNYKNTTSKLSFLVPRDDKHTINAISKNIEQQNNLKLEKLKAVISYIEDSKT
CRNIQLLSYFNETLIKPCGTCDNCLAKEETGNLSPIILEHIITALKKQPYSSQELATFLN
HPESNILDSLKILLEKNKITITSQNKFKLNV
NT seq 1896 nt   +upstreamnt  +downstreamnt
atgagtacacctcttaaaatactaaaaaattattggggttattctcagtttaagtatcct
caaaagaaaattattgaatcaacattagctagaagaaatagcatcgtattattaccaaca
ggtggtggaaaatctctttgttatcaaattcctacaatgcttttagatggtgtttgcatt
gtaatttctcctttaatcgcattaattcaagatcaagttaacagcttaaaaaagaaaaat
attaaagccattgcattgacttctcaattaaaccaagatcaaattattactgcttttgat
aatttacgctttggagattttaaatttttatatttatcacccgaaaaattacaatcagca
ttaattcaggaaaaaataaagcagttaaaagttgctattattgctatagatgaagcgcat
tgtatttcggagtggggacacgattttagaccttcatacctacaattaaaaattttaaag
gagttacaacccaatgccatttttatggccttaactgctactgctacacaaaaggtatta
gatgatattcagcaaaacttagaaattgacaatgcattattattcaaaaaatcttttcag
cgaaataatttacattataatgtaataaccaccgaagatatttatggtaaaacacttcaa
atagtacgcaaaataaatgcatctctaatcatttatacaaatagcagaaaacaaacaaaa
gaagtttgtgattttttattgaaaaacaattttaaaagtagcttttaccatggaggctta
tcatctacacaaaagaatattgcttatacaaaatggatgaaaaatgaaactccaataatg
gttgccactaatgcatttggaatgggtattgacaaacccaatgtaagagccgtaattcat
attaacattcctaatagtctagaaaactttattcaggaagccgggagagcaggaagagat
gataaaacagcctattcaatacttctaacaaacaaatctaatttatttgatacttcaaca
agatttatagcaaatttagcttcaacaaaaattgtaaaaaacatataccaccatctaaat
caatattatgcaattgcaataggagaaacaccttctaaactttttgatttttcgttacaa
gaattttgtcatacctatacattaaaattattgcaaacctacaatgctattaaggtttta
gaaagagaaaacattttacttttagatgaaaattacaacaaaaagtctactcttaaattc
ttggtaagtaattcaaaagtttttgattacataaacctaaaaccatctaaaagtaaattg
attaaattaattttaagaagttacggtggtatttttgaccattacaccataattaacgaa
tatacgctttcaaagaaattaaattgtacaaaaaataacattgttaaacaattaaatgaa
ttgcacacaaatggtattgtaaattataactataaaaatacaacttctaaattatcattt
ttagttccaagagatgataaacataccataaatgctatttcaaaaaatattgagcaacaa
aataatttaaaacttgagaaacttaaagctgtaatttcttatatagaagactctaaaact
tgtagaaatatccaattactttcctattttaatgaaactctaataaaaccttgcggaact
tgtgataactgtttagcaaaagaagaaactggcaacctctctccaattatacttgaacat
attataaccgctttaaaaaaacaaccatactcttctcaagaactagcaacttttttaaac
catccagaaagtaatattttagattcattaaaaatactattagaaaaaaataaaataaca
ataacttcgcaaaataaatttaaattaaacgtttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (43)   

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