KEGG   Lipotes vexillifer (Yangtze River dolphin): 103084702
Entry
103084702         CDS       T03090                                 
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
lve  Lipotes vexillifer (Yangtze River dolphin)
Pathway
lve03013  Nucleocytoplasmic transport
lve03015  mRNA surveillance pathway
lve03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103084702 (DDX39B)
  09122 Translation
   03013 Nucleocytoplasmic transport
    103084702 (DDX39B)
   03015 mRNA surveillance pathway
    103084702 (DDX39B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lve03019]
    103084702 (DDX39B)
   03041 Spliceosome [BR:lve03041]
    103084702 (DDX39B)
Enzymes [BR:lve01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     103084702 (DDX39B)
Messenger RNA biogenesis [BR:lve03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     103084702 (DDX39B)
Spliceosome [BR:lve03041]
 Complex C
  Other components
   EJC/TREX
    103084702 (DDX39B)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    103084702 (DDX39B)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 103084702
NCBI-ProteinID: XP_007459648
UniProt: A0A340XDW5
Position
Unknown
AA seq 522 aa
MGRMLASFMPFVTSSSGGVRSGLKKIFFSTQAFSKGNPGTRGTIEPWKVLLPVPYVCAVV
RREAGVEGSREPEVKADSFFRRCYRRHTPSPCSVMAENDVDNELLDYEDDEVETAAGGDG
AEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVL
CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA
VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD
MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY
VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER
LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL
AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq 1569 nt   +upstreamnt  +downstreamnt
atggggaggatgctagcttcctttatgccttttgttactagtagtagtggaggagttaga
agtggcttaaaaaaaattttcttttccacacaggcattttctaaaggcaaccctggaacg
cgcggaactatagaaccgtggaaggtccttcttccggtcccttacgtctgcgcggtcgta
aggcgggaggccggggtagagggaagccgggaaccggaagtgaaggcagattccttcttt
cgtcgctgttaccgccgccatacgccttcgccttgctcagttatggcagagaacgatgtg
gacaacgagctcttggattatgaagatgatgaggtggagacagcagctgggggagatggg
gctgaggcccctgccaagaaggatgtcaagggctcctacgtctccattcacagctctggc
tttcgtgacttcctgctcaagccagagttgctccgggccattgttgactgtggctttgag
catccatcagaagtccagcatgaatgcatccctcaggccatcctgggaatggatgtccta
tgccaggccaagtcaggcatgggaaagacagcggtgtttgtgctggctacactgcaacag
ctggagccagttactgggcaggtgtctgtactggtgatgtgtcacactcgggagttggct
tttcagatcagcaaggaatatgaacgcttctctaaatacatgcccaacgtcaaggtcgca
gtgttttttggtggtctgtctatcaagaaagatgaagaggtgctgaagaagaactgcccg
catatcgtcgtggggacccctggccgcatcctagccctggctcgaaataagagcctcaat
ctcaaacacattaaacactttatcttggatgaatgcgataagatgcttgaacagctcgac
atgcgtcgggatgtccaggaaatttttcgcatgaccccccatgagaagcaggtcatgatg
ttcagtgctaccttgagcaaagagattcgcccagtctgccgcaagttcatgcaagaccca
atggagatcttcgtggatgatgagacgaagctgacgctgcatgggttgcagcagtactac
gtgaaactgaaggacaacgagaagaaccggaagctctttgaccttctggatgtccttgaa
ttcaaccaggtggtgatatttgtgaagtctgtgcagcgttgcattgccctggcccagctc
ctggtggagcagaacttcccagctattgccatccaccgtgggatgcctcaggaggagagg
ctttctcggtatcagcagtttaaagattttcaacgacgaattcttgtggctaccaacctg
tttggccgaggcatggacatcgagcgggtgaacattgcctttaactacgacatgcctgag
gattctgacacctacctgcatcgggtggccagagcaggccggtttggcaccaagggcttg
gccatcacgtttgtgtcagatgagaatgatgccaagattctcaatgatgtgcaggatcgc
tttgaagtcaatattagtgagctgcctgatgagatagacatctcctcctacattgaacag
acgcggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (62)   
   KEGG ORTHOLOGY (1)   
   RefGene (58)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (79)   

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