KEGG   Lysinibacillus sp. YS11: LBYS11_15635
Entry
LBYS11_15635      CDS       T05299                                 
Name
(GenBank) Holliday junction branch migration DNA helicase RuvB
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
lys  Lysinibacillus sp. YS11
Pathway
lys03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lys00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    LBYS11_15635
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lys03400]
    LBYS11_15635
Enzymes [BR:lys01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LBYS11_15635
DNA repair and recombination proteins [BR:lys03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     LBYS11_15635
    RecFOR pathway proteins
     LBYS11_15635
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 TIP49 Mg_chelatase AAA_16 DUF815 AAA_14 NB-ARC nSTAND3 AAA_22 Sigma54_activat Rad17 AAA_3 TsaE RNA_helicase Sigma54_activ_2 AAA_17 bpMoxR NTPase_1 AAA_24 NACHT AAA_25 AAA_18 Bac_DnaA IstB_IS21 AAA_28 Parvo_NS1 AAA_33 AAA_19 AAA_7 ATPase_2 AAA_11
Other DBs
NCBI-ProteinID: AUS87678
Position
complement(3148430..3149434)
AA seq 334 aa
MSERMMASEAGSYDEQFELSLRPQKLAQYIGQHKVKENLQIFIEAAKLRQESLDHVLLYG
PPGLGKTTLAAVIANEMNVNVRMTSGPAIERPGDLAAILSSLEPGDVLFIDEIHRLPRAI
EEVLYPAMEDFCLDIVVGKGPEARSVRLDLPPFTLVGATTRAGALSAPLRDRFGVLLRLE
YYDDRSLAEIVVRSAHLFEVEIEQVAAMEMARRSRGTPRIANRLLKRVRDYAQVLGDGMI
TEGLAQQALELLQVDPRGLDHIDHKLVTNMIERFRGGPVGLDTLAASIGEERVTIEDVYE
PYLMQIGLIQRTPRGRVATHLAYEHFGYEYPQQT
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgtctgaacgtatgatggcaagtgaagcagggagctatgatgagcagtttgagttatct
ttacgtcctcaaaaattagcacagtatattgggcaacataaagtaaaggaaaacttacaa
atattcattgaagcggcaaagcttcgccaagaaagtttagatcatgtgttgttatatgga
cctccaggacttggtaaaacgaccttagcggctgttatcgcaaatgagatgaatgttaac
gtacgcatgacaagtggccctgcgattgagcgtccaggagatttggcagctattttaagt
tcactagagcctggggacgttttatttattgatgaaattcatcgactgccccgtgctatt
gaagaagtattatatccagcaatggaagacttctgcttagatattgtggtaggaaaaggt
cctgaagcacgttctgtacgacttgatttacctccctttacccttgtaggtgcaacaaca
agagcgggtgctttatcagctcctctaagagatcgctttggtgtgttgctgcgcctagaa
tattatgatgaccgatcgcttgctgaaattgttgtgagaagtgcacatttatttgaggta
gaaatagagcaagtagcagcaatggaaatggcgagacgctcacgtggaacacctcgaatt
gccaatcgtttattgaaacgagtgcgagattatgcacaagtgcttggagatggtatgata
acggagggtcttgcacagcaagcattagagctgttacaagtagatcctagagggcttgat
catattgaccataaacttgtaaccaatatgattgagcgattccgaggaggcccagtaggc
ttagatactcttgctgcatcaattggtgaggaacgggttacgatagaagatgtatacgag
ccttatttgatgcaaattggccttattcaacgtaccccgagaggaagagtagccacacat
ttagcttacgaacattttggatatgagtatccccaacaaacataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (35)   
   Pfam (35)   
All databases (44)   

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