KEGG T00080: MA0728

Methanosarcina acetivorans: MA0728

Entry

MA0728 CDS T00080

Gene name

lig

Definition

DNA ligase (ATP)

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

mac Methanosarcina acetivorans

Pathway

mac03030	DNA replication
mac03410	Base excision repair
mac03420	Nucleotide excision repair
mac03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:mac03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:mac03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:mac03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:mac03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2 Vps5

Other DBs

NCBI-GI:

20089613

NCBI-GeneID:

1472620

UniProt:

Q8TSR7

Position

complement(847988..849730)

AA seq 580 aa
MVRFKELAELFEELERITSHKEIVRKLAGFFGGLKGDEVKDSAYLFLGSIGPAFENTTLG
IKDRLVTRAIAGAYGVSEEEVKKRYARAGDLGDVAFELSKKREASLTIEEVFKRLRQIKE
ASGKGSQEKKTGLLSDILQKATPEEGKYIIRIVLGRLRLGFGDQFLLEAFSIAFTGDKKH
AGKIKESYSVCTDIGELAQTLAEHGAGAPGYFSIKPGRPVKSMLAQRVESFEELEERIKG
KKAAEEKYDGERVQIHKAGDEIKAFSRRLEDITAQYPDIIEAVRESISADTIVLDGEIVA
YAELEKENTRIEEFYPFQNLMQRRRKYEVEKYREKCPVAVFFFDILYLNGESLLKKTYPE
RRALLEEHVNGSGIVHLTRRTVTENIEELEDFFNETVEKGLEGIVAKSMSSNSVYEAGKR
SWLWLKWKQEYSEGMRETFDLVVVGSYYGKGKRKGSFGALLCAVLNEEEQQFETFTKVGT
GFTEADAEEINSLLSAHTVSEAPKNVIIKKGMLPDIFIEPAVVIEVLGSEITNSPGHTAG
EGEEETGLALRFPRFLRIRYDRAPFDATTVREIRDLKEGI

NT seq 1743 nt +upstreamnt +downstreamnt
atggtgcggtttaaggagcttgccgagctttttgaggagctcgaacggatcacgtcccat
aaggaaatcgtaaggaagcttgcaggattttttgggggacttaaaggggacgaggtaaag
gatagtgcctatctttttcttgggagcataggccctgcctttgagaacacaactttaggg
ataaaagataggcttgttacaagagccatcgcaggagcctatggagtttccgaagaagag
gtcaaaaagcgatatgcaagggcaggagacctcggagatgtagcttttgagctgagtaaa
aaaagagaagcttcactgacaattgaagaagttttcaaaaggctgagacagataaaagaa
gcctcagggaaaggaagccaggagaagaagaccgggcttctttcggatatcctgcagaag
gccacacctgaagaagggaaatacataataaggattgtactcgggaggctcaggctggga
tttggagaccagtttttactcgaagccttttcaattgcctttacgggagataaaaagcat
gcaggaaaaataaaagaaagctacagtgtctgcacggacatcggagaacttgcacaaacc
cttgcagagcatggagccggggctccagggtatttctccataaaaccgggaagacctgtg
aaatcaatgcttgctcagcgtgttgaaagctttgaagagcttgaagaaaggattaaaggg
aaaaaagcagccgaggagaaatacgacggtgagagggtgcagatccacaaagccggagac
gagattaaagctttttcccgcaggcttgaagacatcactgcccagtacccggacattata
gaagctgtaagggaaagtatctctgcggacacaatcgtgcttgacggggaaatcgttgca
tatgccgaactggaaaaagagaatacccggatagaagagttctacccgtttcaaaacctg
atgcagaggcgtagaaaatacgaggttgaaaagtacagggaaaaatgccccgttgcggta
ttcttttttgatatcctttacctcaacggagaatcccttctgaagaaaacctaccctgaa
agaagagctctcctcgaagagcatgttaacgggtcaggaatagtgcacctcaccagaaga
actgttacggaaaatatagaggagcttgaggacttttttaacgaaactgtcgaaaagggg
ctggaaggaattgtggccaaatccatgagcagcaactctgtctacgaagccgggaaaagg
agctggctctggctcaaatggaaacaggaatactccgaaggcatgagagaaacctttgac
cttgtggttgtagggagctattacggaaaagggaaaaggaaaggctcctttggggcactc
ttatgtgcagtcctgaacgaagaggaacagcaatttgaaaccttcacaaaagtaggtacg
ggttttactgaagcggatgctgaagaaatcaacagcctgctttcagcccacacggtaagt
gaagctccaaagaatgtcatcataaaaaaagggatgcttcctgatatcttcatagaaccg
gcagttgttattgaagtcctcggctcggagatcacaaacagcccggggcatactgcggga
gaaggggaagaagaaacagggcttgcactgcgttttccccgctttttgcgtataaggtat
gacagagcgccctttgatgccacgacggtcagggaaataagggatttgaaggaaggaatt
tga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

Download RDF

DBGET integrated database retrieval system