KEGG   Magnetospirillum sp. ME-1: WV31_16720
Entry
WV31_16720        CDS       T04817                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
magn  Magnetospirillum sp. ME-1
Pathway
magn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:magn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    WV31_16720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:magn03019]
    WV31_16720
   03016 Transfer RNA biogenesis [BR:magn03016]
    WV31_16720
Enzymes [BR:magn01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     WV31_16720
Messenger RNA biogenesis [BR:magn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     WV31_16720
Transfer RNA biogenesis [BR:magn03016]
 Prokaryotic type
  tRNA degradation factors
   WV31_16720
SSDB
Motif
Pfam: RNB S1 CSD2 RNase_II_C_S1 LexA_DNA_bind PF0610-like_N
Other DBs
NCBI-ProteinID: ARJ67193
UniProt: A0A1W6CQN8
Position
3607540..3609786
AA seq 748 aa
MKKPTHKPKKIVPIPSKQEILDFIRAQPGRVGKRELARAFNLKGADKIDLKAILKELERE
GAVERGQKRRFARPGALPDVGVVEIIGSDSDGELLARPLNWEGDGRPPRIFMAPFRPGEA
AVGVGDRVLAKLKRVRGEDVYEARPIRVIGEARARVLGVFEPNPDGSGRLRPTSRKEKAE
YIVPRGETSDAKAGELVLADIMPGRLYGVRTASVKERMGLLGAPRSVSLVAIHTNDIPFE
FPEAALKQAAAEGPAPMGDRTDLRSIPLVTIDGEDARDFDDAVFAEPDSDPKNPGGWHCI
VAIADVSWYVRPGDALDKEAFKRGNSVYFPDRVVPMLPEELSNGWCSLKPDEDRPCMGVH
FWLDALGNKLRHRFVRGMMRSVARLTYTQVQAARDGRPDDKTAPLLSNVIEPLYGAWAAL
FRERKERGVLELDIPERKVTITPDGKVESITERERFDSHRLIEDFMIMANVCAAETLEKV
GKPCMYRIHDLPSQEKLEGLREFLSSLDLKLAKGQVLRPAHFNRILEAVADTANSHLVSE
VILRSQAQAQYSPENIGHFGLGLARYAHFTSPIRRYADLLVHRALIAGLHLGEGALPADA
VAHFAEWGEHISITERRAAVAEREAVDRYVTAFLSDRVGATFAGKVSGVTRFGLFVTLDQ
TGADGLVPISTLPEDFYVHDEVHHCLVGKRTRKTFQLGQKLEVELAEANTLTGSMVFRLG
GAPERPARPPRPGSRPFRPGGGGRKGRR
NT seq 2247 nt   +upstreamnt  +downstreamnt
atgaaaaagccgacgcacaagcccaagaagatcgtccccattccgtccaagcaggaaatc
ctcgacttcatcagggcccagcccggacgggtcggcaagcgcgagctggcgcgggccttc
aacctcaagggcgccgacaagatcgacctcaaggccatcctgaaggagctggagagggaa
ggcgccgtcgagcgcggccagaagcggcgcttcgcccgtcccggcgcgctgcccgacgtg
ggcgtggtggagatcatcggcagcgacagtgacggcgaattgctggcgcggcctctgaac
tgggagggtgacgggcggccgccgcgcatcttcatggcgcccttccgtcccggcgaggcg
gcggtgggcgtcggcgaccgggtgctggccaagctgaagcgggtcaggggcgaggacgtc
tacgaggcgcggcccatccgcgtcatcggcgaggccagggcccgcgtgctgggcgtgttc
gagcccaaccccgacggctcgggccgcttgcgccccacctcgcgcaaggaaaaggccgag
tacatcgtgcccaggggcgaaacctctgacgccaaggcgggcgaactggtgctcgccgac
atcatgcctgggcggctctatggcgtgcgcaccgcctcggtgaaggagcgcatgggcctg
ttgggcgcgccgcgctcggtcagcctggtggccatccacaccaacgacattcccttcgag
ttccccgaggccgccctgaaacaggcggcagccgaggggccggcgcccatgggcgaccgc
accgacctgcgttccatccccctggtcaccatcgacggcgaggatgcgcgcgacttcgac
gacgcggtgttcgccgagcccgattccgaccccaagaatcccggcggctggcactgcatc
gtcgccatcgccgacgtgtcgtggtacgtgcggcccggcgacgccctggacaaggaagcc
ttcaagcgcggcaactcggtctatttccccgaccgggtggtgcccatgctgcccgaggag
ctgtccaacggctggtgctcgttgaagcccgacgaggaccgcccctgcatgggggtgcat
ttctggctggacgccctgggcaacaagctgcggcatcgtttcgtgcggggaatgatgcgc
tcggtggcgcgcctcacctatacccaggtgcaggcggccagggacgggcggcccgacgac
aagaccgccccgctgctctccaatgtgatcgagccgttgtacggtgcctgggcggccttg
tttcgcgagcgtaaggaacgcggcgtgctcgagctcgacatccccgagcgcaaggtgacc
atcacgccggacggcaaggtggagtccatcaccgagcgcgaacgcttcgacagccaccgg
ctgatcgaggacttcatgatcatggccaatgtctgcgccgccgagaccctggagaaggtc
gggaagccctgcatgtaccgcatccacgatttgccctcccaggagaagctggagggcctg
cgggaattcctgtcgtcgctggacctgaaactggccaagggccaggtgctgcgtcccgcc
catttcaaccgcatcctcgaagccgtggccgacaccgccaattcccatctggtgagcgag
gtgatcctgcgctcccaggcccaggcccagtacagcccggagaatatcggccatttcggc
ctggggctggcgcgctatgcccacttcacctcgcccatccgccgctatgccgatctgctg
gtccaccgggcgctgatcgccgggctgcatctgggcgagggcgcgctgcctgcggatgca
gtcgcacacttcgccgagtggggcgagcacatttcgatcacggaacggcgcgccgcggtg
gccgagcgcgaagcggtggaccgctacgtaaccgccttcctgtcggaccgggtgggggcg
acctttgcgggcaaggtgtcgggcgtcacccgcttcggcctgttcgtcaccctggatcag
accggggccgacgggctggtgcccatctcgacgctgcccgaggatttctacgtccatgac
gaggtccaccactgcctggtgggcaagcgcacccgcaagacgttccaactgggccagaag
ctggaggtggaactggccgaggccaacacgctcaccggctccatggtgttccgcttaggc
ggagcgcccgaacgtcccgcccgtccgccccgtccggggtccaggccgttccgccccggc
ggcggagggcgcaaagggcggcgatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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