KEGG T00433: MAV

Mycobacterium avium 104: MAV_3937

Entry

MAV_3937 CDS T00433

Gene name

ligB

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

mav Mycobacterium avium 104

Pathway

mav03410	Base excision repair
mav03420	Nucleotide excision repair
mav03430	Mismatch repair
mav03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:mav03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:mav03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:mav03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:mav03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JCVI-CMR:

UniProt:

Position

4064305..4065885

AA seq 526 aa
MSPSHAKLATVLLFDVATASADVGGTPSRLTKVARIADLLRRAAPDAALVAIVVSWLSGE
LRQRQIGVGWAALRSRPPAAAHPTLTVVAVDAAFAEIGAVAGKGAQARRAALLNALFAAA
TETEQTFLLRLLGGELRQGALAGIMADAVARAAGIPAAAVQRAAMLGGDLPAVAAAALSG
EAAALSGEASALDAFTLRVGRPVAPMLAQTAAGVAEAIERHGGQAIFEAKLDGARVQIHR
AGDQVTVYTRSLDDVTARLPEVVTATLALPVEALIADGEAIALRPDNSPQRFQVTASRFG
RSVDVAAAVAAQPLSVFFFDILHCDGVDLLDAPTTDRLAALDALVPPAQRVDQLLTADPD
AAGRFLEATLAAGHEGVMAKAPGAPYQAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRG
KLSNIHLGARDPATGEFVMVGKTFKGMTDAMLDWQTARFTELAVGGTDGYVVRVRPEQVV
EVAVDGVQKSSRYPGGLALRFARVLRYRDDKGPAEADTIDAVRALY

NT seq 1581 nt +upstreamnt +downstreamnt
ttgtcaccgagccatgccaagctggcgaccgtgctgcttttcgacgtggcgacggcgtcg
gccgacgtcgggggcacgccgtcgcggctgaccaaagtcgcccgcatcgccgacctgctg
cgccgggccgcacccgacgccgccctggtcgcgatcgtcgtgtcgtggctgtccggtgag
ttgcggcagcgccagatcggggtcggctgggcggcgttgcgctcgcgcccgcccgcggcc
gcacatcccacgctgaccgttgtcgcggtggacgccgccttcgccgagatcggcgccgtg
gcgggcaagggcgcccaggcgcgccgcgcggccctgctgaacgcgttgttcgccgcggcc
accgagaccgagcagacgtttctgctgcggctgctgggcggcgaactgcgccagggcgcg
ctggccgggatcatggccgacgccgtcgccagggccgccgggataccggccgccgcggtg
cagcgcgccgcgatgctgggcggtgacctgccggcggtggcggcggccgcgctgtccggg
gaggcggccgcgctgtccggtgaggcgtccgcgctggacgccttcacgctgcgggtgggc
cggccggtcgcgccgatgctggcccagaccgcggcgggtgtggccgaggcgatcgaacgc
cacggcgggcaggcgattttcgaggccaagctggacggggcgcgggtgcagatccaccgc
gccggcgaccaggtcaccgtctacacccgaagcctcgacgacgtcaccgcccggctgccc
gaggtggtgaccgcgacgctggcgctgccggtcgaggccctgatcgccgacggtgaggcg
atcgcgctgcggccggacaactcaccgcagcgcttccaggtcaccgcctcacgcttcggc
cgctcggtagatgtcgcggcagccgttgcggcgcaaccactttcggtgttcttcttcgac
atcctgcactgcgacggcgtcgacctgctggacgcgccgaccaccgaccggctggccgcg
ctggacgccctggtgccgcccgcgcagcgggtcgaccagctgctcaccgccgaccccgac
gcggcgggccggttcctggaggcgacgctggccgccgggcacgagggcgtgatggccaag
gcgccgggcgcgccctatcaggcgggccggcgcggggcgggctggctcaaggtcaagccg
gtgcacacgctggatctggtggtgctcgccgtggagtggggctcggggcggcgccgcggc
aagctgtccaacatccacctgggcgcccgcgacccggccaccggcgaattcgtcatggtg
ggaaagactttcaagggcatgaccgacgcgatgctggactggcagacggcccggttcacc
gagctggccgtcggcggcacggacggctacgtggtgcgggtgcgacccgagcaggtggtc
gaggtggcggtggacggtgtgcagaaatcctcgcgctaccccggcgggctggcgctgcgg
ttcgccagggtgctgcgctaccgcgacgacaagggacccgccgaggccgacaccatcgac
gccgtccgcgcgctgtactga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JCVI-CMR (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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