KEGG T00271: Mbar

Methanosarcina barkeri: Mbar_A1643

Entry

Mbar_A1643 CDS T00271

Definition

DNA ligase (ATP)

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

mba Methanosarcina barkeri

Pathway

mba03030	DNA replication
mba03410	Base excision repair
mba03420	Nucleotide excision repair
mba03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:mba03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:mba03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:mba03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:mba03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1:complement(2026807..2028456)

AA seq 549 aa
MERKEIKDSAYLFLGSIGPAFENITLGIGDKLALKAIAGAYRVSEEEVKKRYSRTGDLGD
VAFELNQGEEKSLAIDEVFGSLKEIKEASGKGSQEEKTGLLSSILQRASPKEGKYIVRIV
LGKLRLGFGDQFLLEAFSIAFTGDKKYVVKIKESYSVCTDIGELAESLAEQGPKALGHFS
IKLGRPVRSMLAQRVKTFEELEERIPGKKAAEEKYDGERVQIHKNGEEIKAFSRRLEDIT
AQYPDVIEAVRKGILAKKIVLDGEIIAYVEGGKANDSTGEFYSFQRLMKRRRKYEVQKYT
EICPVAVFFFDILYLEGNSLLKKPYPERRAILEEHVKESEILHLARRIVTDNLEEIEDFF
NEALEKRLEGIIIKSMGRNSAYEAGKRSWFWLKWKEEYASGMRETFDLAIIGKYYGRGKR
KGSFGALLCAILNGEEQRFETFTKVGTGFTEADAKEIDSLLSEHIISEVPKNVLIKSRML
PDIFVEPSLVIEVLGSEITESPSHTAGQGEGDTGLALRFPRFLRIRHDKGPYDITTLTEV
RNLKEGKSI

NT seq 1650 nt +upstreamnt +downstreamnt
ttggaaagaaaggaaataaaggacagtgcatacctttttctcgggagcataggacctgcc
tttgagaatataacactgggaataggagataagctcgctttaaaagctattgccggagca
tacagagtttccgaagaggaggttaaaaaaagatattcaaggacaggggaccttggggat
gtggcgtttgagttaaaccaaggagaagaaaagtctctggcaatcgatgaagtgtttggg
agcctaaaagagataaaagaagcctcaggaaaaggaagtcaggaggaaaaaaccgggctg
ctttccagcatcctgcagcgagctagccccaaagaaggaaaatatatagtcaggattgta
cttgggaaacttaggcttggttttggggaccagtttctacttgaagcattttctattgct
tttacaggagacaaaaaatatgtcgtcaagatcaaagaaagctacagcgtctgtaccgac
atcggagagcttgcagaatcccttgcagaacaaggtccaaaagctcttgggcacttttcc
ataaaactcggccggcctgtcaggtcaatgcttgcgcagcgcgtgaaaacttttgaagag
cttgaagaaagaatccccggaaaaaaagcagcagaagaaaaatatgatggggagagagtg
cagatccataaaaacggagaagagatcaaagctttttctcgaaggcttgaagatataact
gcccagtatcccgatgttatagaagcagtcaggaaaggcattcttgcgaagaaaatcgtg
cttgatggggaaattattgcatacgttgaaggcgggaaagcaaacgattcaactggagaa
ttttattcattccagagactaatgaagaggcgcagaaagtatgaggtccaaaaatatact
gaaatttgccctgttgccgtattcttttttgatattctgtacctggaaggaaattcgctc
ctgaagaaaccttacccggaaagacgggctatccttgaggaacatgtaaaggaatcagaa
attcttcaccttgctagaagaattgttacggataatcttgaagagatcgaggactttttc
aacgaggctctggaaaagaggcttgaaggaattataatcaaatccatgggtcggaactca
gcttacgaagccggaaaaaggagctggttctggctcaaatggaaagaagaatatgccagc
gggatgagggagacctttgaccttgcaattatagggaaatattacgggcgaggaaaaaga
aaaggttcatttggagcactcctctgtgcaattcttaatggagaggaacagcgttttgaa
acttttacaaaagtcgggaccgggttcacagaagcggacgctaaagaaatcgacagcctg
ctttcagagcatattatttctgaagtccctaaaaatgtactcataaaaagtagaatgctt
ccggatatctttgtagagccttctctggttattgaagtccttggttcggagattactgaa
agcccgagtcacactgccggacagggagaaggagataccgggcttgctctgcgttttcct
cgctttttacgcataaggcatgataaaggaccttatgatattactacacttacagaagtc
aggaatttaaaggaaggcaaaagcatttga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-MBA (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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