KEGG   Candidatus Methylopumilus turicensis: BN1209_0723
Entry
BN1209_0723       CDS       T03844                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
mbac  Candidatus Methylopumilus turicensis
Pathway
mbac03030  DNA replication
mbac03430  Mismatch repair
mbac03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:mbac00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BN1209_0723 (dnaE)
   03430 Mismatch repair
    BN1209_0723 (dnaE)
   03440 Homologous recombination
    BN1209_0723 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mbac03032]
    BN1209_0723 (dnaE)
   03400 DNA repair and recombination proteins [BR:mbac03400]
    BN1209_0723 (dnaE)
Enzymes [BR:mbac01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BN1209_0723 (dnaE)
DNA replication proteins [BR:mbac03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BN1209_0723 (dnaE)
DNA repair and recombination proteins [BR:mbac03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BN1209_0723 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DNA_pol_IIIA_C
Other DBs
NCBI-ProteinID: CEN55766
UniProt: A0A0B7IZ40
Position
1:702036..705536
AA seq 1166 aa
MRHGYFNQVKFNAMSVNLSQPSFVHLRCHSEYSIVDGTVRIDDYVAHATKDQMPALALTD
LSNLFGAIKFYKEARGNGVKPILGCDLWLENSTNRDQPYRVMLLCQTLVGYTKLCALISR
AYLENQYRGKPEIKREWLIEAGSEGLIMLSSGMMGDIGQALLQGNTATAKQLAQAWADLF
PNRFYIELQRAGHAQQEAYISRAVALASQLALPVVATHPVQFIETEDFKAHEARVCIAEG
YVLADTRRPKAFTEDQYFKTQAEMNALFVDIPEALANSVEIAKRCNLTLSLGKNFLPQFP
TPNGEGLDEYLVTQAQEGLLKRLEVLYPDAEKRAAKAPEYEARLAFETSIIIQMGFPGYF
LIVADFINWAKHNGVPVGPGRGSGAGSVVAYSLGITDLDPLQYALLFERFLNPERVSMPD
FDIDFCQEGRDRVIDYVKQKYGLEAVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAK
LIPLELGITLKDALEKEPQLAERREQEEEVKELLELALRLEGLTRNVGMHAGGVLISPSK
ISDFSPIYCQANGDSLVSQYDKDDVEAVGLVKFDFLGLRTLTILEMALVNANAQRAEQNL
PALSFETLPIDDKPTYQLLKSANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPG
PMDLIPDFCRRKHGLQRVEYPHPAVEPILKETYGIMVYQEQVMQIAQVVGGYSLGGADLL
RRAMGKKKKEEMDAQRAVFVDGAKQKGTPERQAADLFDLMEKFASYGFNKSHAAAYALVA
YHTAYLKTHYPAAFLAATLSADMNNTDSVHIFYDDCVGNGVEVLPPDINQSEFKFKPISD
KQVLYGLGALKGSGEAAIEVILAARQQDGPFKDLFDFCARLDLRKVNRRVIESLIRAGAF
DKLEPNRNALLAGVNLAISAAEQSGAASGQNSLFGAVSDSAAHILPKVPAWAEPEKLQQE
KVALGFYLSGHPYQAYQKELTTFVHTDLGNLKPQDQPQLMAGVVMGVRIRMTQRGKMAIV
TLDDAKSRVEVVVGSEMLAQNAHLIKEDQLLVIEGRVSHDDFSGGVRVNVRKIYDIASAR
SAYANMLKISCNGQADAVKLRELLAPYCRANAEQNNRGCAVKVEYHNSQARVEMMLGEQW
RVELHDDLLIGLKAWLSEENVKILYN
NT seq 3501 nt   +upstreamnt  +downstreamnt
atgcgacatgggtacttcaatcaggtaaaattcaatgctatgtcagtcaatttatctcaa
ccttcatttgttcatttgcgttgccacagtgagtattccattgtggacggaacggtgcgt
attgatgattacgtagcgcatgccacaaaagaccaaatgccagccttggcattgacagat
ttaagcaatttatttggcgcgattaagttttacaaagaagcccgcggcaatggcgttaag
ccgattttaggctgtgatctttggcttgaaaattcaacgaatcgcgaccagccttacagg
gtgatgttgctttgccaaacattagtgggttacaccaaactttgcgcgctgatcagtcgc
gcttatcttgaaaatcaatatcgtggtaaaccggaaattaaacgcgagtggctgattgag
gctggttcagagggtttaatcatgctctctagcggcatgatgggtgatataggccaagcg
cttttacagggtaataccgcaaccgctaaacagctcgcacaagcttgggcagatttattc
cctaaccgtttttatatcgaacttcaacgcgcaggccatgcgcaacaagaggcttatatt
tctcgtgctgtggcgctggcttctcagctggccttgcctgtggtggcaacacatcctgtg
cagtttatcgagacggaagattttaaagcacatgaagcgcgggtgtgtattgcggaaggc
tatgtgctggctgatacgcgtcgtcctaaagcattcaccgaagatcaatatttcaaaacc
caagcagagatgaatgcgctttttgtggacattccagaggctttggcgaacagcgtggaa
attgccaagcgttgtaatttaacgctttctttgggtaaaaacttcttgccacaatttcct
acacctaatggcgagggtttggatgagtatttggttacacaagcgcaagaaggtttgctt
aagcgcttagaagtgctttatccagatgctgaaaagcgtgccgccaaagccccagaatat
gaagcgcgacttgcctttgaaaccagcatcattattcaaatgggcttccctggctacttt
ttaattgtggcggattttattaactgggctaagcataacggcgtgcctgttggccctggc
cggggctctggtgcgggttcagttgtggcttatagcttgggcattaccgatcttgatcca
ttgcaatacgccttgctgtttgagcgcttcttaaacccagagcgggtttctatgcccgac
ttcgatatcgacttctgccaagaaggtcgtgaccgcgtcattgattacgtgaagcaaaag
tacggattggaggcggtttctcaaatcgccactttcggtaccatggcggctaaggccgtg
attcgcgacgtcgggcgtgtgcttgatttgccttttaattttgtggatggcattgcaaag
cttattccgttagagcttggtattacgcttaaagatgcgcttgagaaagagccgcaatta
gcggaacgtcgtgagcaagaggaagaagtcaaagagctacttgagttagcgcttcgcctt
gagggtttaacgcgtaacgtcggtatgcatgccggtggtgtgctaatttcaccaagtaaa
atttctgacttctctccgatttactgtcaagccaatggcgatagcttggtgagccaatac
gataaagatgacgtagaagcggttggtttagtgaagtttgactttttgggcttacgcaca
ctgacgattttagaaatggccttggtcaatgcgaacgcgcagcgcgcggagcaaaatctg
ccagcgctatcatttgagaccttgccgattgacgacaagccaacttatcagcttctaaaa
tcagccaataccacagcggtattccagctagagtcacgcggcatgaaggacatgcttaaa
caagcaaagcctgactgctttgaagatattattgccttggtggctttgtatcgtcctggt
ccgatggacttgattccagacttctgccgtcgtaagcatggcttacagcgcgtggaatat
ccgcacccagcagttgagcctatcctcaaggaaacctacgggattatggtgtatcaagag
caggtgatgcagattgcgcaggtcgtcggaggctatagccttggcggcgctgacttgctt
cgtcgtgccatgggtaaaaagaaaaaagaagaaatggatgcccagcgtgccgtttttgtg
gacggcgctaaacaaaagggcacgcctgaaaggcaagccgctgatttattcgatttaatg
gagaagtttgcgagctacggctttaataaatcgcatgcggcggcttatgccttggtggct
taccatacggcctatcttaaaacgcattatcctgcggctttcttagccgctactttgtct
gcagatatgaacaacacagacagcgtgcatattttttatgatgactgtgtgggtaacggg
gtagaggtgctgccaccggatattaatcaaagtgaattcaagtttaagcccatcagtgat
aagcaagtgttatatggcttaggtgccctgaagggctcaggtgaggcggcgattgaagtg
attcttgcggcgcgtcagcaagatgggccatttaaggatttattcgatttttgcgcgcgc
ttggatttgcgcaaagtgaatcgccgcgtgattgaatcgctcattcgtgccggcgcgttt
gacaaactagagcctaatcgtaatgctttgttagcaggggtcaatttagccattagtgca
gccgagcaaagtggtgcggcaagtggtcaaaatagcttgtttggtgcggtgtctgatagc
gctgcccatattttgcctaaggtgccagcttgggctgagcctgaaaagttacaacaagaa
aaagtggcgctaggtttctacttgagcggccatccataccaagcctatcaaaaagaatta
acaacatttgtgcacacagatttaggtaatcttaagccacaagatcaaccgcaactcatg
gctggtgtggtaatgggcgtccgtattcgcatgacccagcgtggcaagatggcgattgtg
actttagatgatgctaaatcccgtgttgaagtggtggtggggagtgagatgcttgcgcag
aacgcacatctgattaaagaagaccagctgttggtgattgaaggtcgcgtaagtcatgat
gacttctcgggtggtgtgcgtgtgaatgtacgtaagatttacgacattgcttcagcacgc
agtgcgtatgccaacatgctgaaaatatcctgcaatggtcaggccgacgcagtgaaatta
cgcgagcttttagcgccttattgccgcgctaatgctgaacaaaataatcgtggttgtgcg
gtaaaagtggagtatcacaacagccaagcgagagtagaaatgatgcttggcgagcaatgg
cgtgtagagctgcatgatgatttattaatcggattaaaagcttggttaagcgaagaaaac
gtaaaaatcctctataattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (69)   
   KEGG ORTHOLOGY (1)   
   RefGene (66)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (85)   

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