KEGG   Candidatus Methylopumilus planktonicus: BN1208_0821
Entry
BN1208_0821       CDS       T03869                                 
Symbol
rne
Name
(GenBank) Ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
mbat  Candidatus Methylopumilus planktonicus
Pathway
mbat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mbat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BN1208_0821 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mbat03019]
    BN1208_0821 (rne)
   03009 Ribosome biogenesis [BR:mbat03009]
    BN1208_0821 (rne)
Enzymes [BR:mbat01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     BN1208_0821 (rne)
Messenger RNA biogenesis [BR:mbat03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BN1208_0821 (rne)
Ribosome biogenesis [BR:mbat03009]
 Prokaryotic type
  rRNA processing factors
   BN1208_0821 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DUF4901 IKKbetaNEMObind
Other DBs
NCBI-ProteinID: CEZ19706
UniProt: A0A0D6EW26
Position
1:755299..757641
AA seq 780 aa
MKRMLFNATQSEELRVAIVDGQKLIDLDIERGSRALKKSNIYKGIVTRVEPSLEAAFVNY
GAERHGFLPFKEISPQYFKDSTQNLPRIQDVIEEGQEIIVQVTKEERGNKGAALSSYLSL
AGRYIVLMPNNPDGGGVSRRVEGEERKEFRDHISNLDITEGMSVIGRTAGVGSSLEELQW
DLNYLKQLWTAIEEASQGQSGAFLIYQEGNLVIRAIRDYFHPEIGEILIDAQEIYDQATQ
FMNHVMPNYVDRVKLYEDEVSLFSRFQIEHQIESAFSREVRLPSGGAIVIDHTEALVSID
VNSSRATKGSDIEHTAFNTNIEAAEEVAKQLRLRDLGGLIVIDFIDMESQKNQREVENRF
RDALHHDRARVQTGKISRFGLLELSRQRLRPSIGESSNSLCTKCNGTGSIRDIQSSALHI
LRMIQEEAMKEHNATISAQLPIEVATFLLNEKRSDIYSLEQRLKVEIILIPNKHLESPNY
SISSAKQEDIANQSKPSYQMMESLNEGNQVLNYKQASSEPKQEPLVKGIVPDTPAPTGSG
KPNKTLFGFFKNLIAGDDENTQNSSEEKIEVSETTENNRPRPQNNNRGRNNRNQKFKQQH
NNKKPQGEAKPSETDLTLPSEKTSPPETRPNQDNNRRGRNNHNSRGRFNKDRGTRSNQGP
NDFEKKALASQDAPTLNKSAPEARVPQVTKSEPKPIEASKKPTPPKPRKRVEEKPVDLKA
VGLELVETKAKSKPKAKKEVEEKPKKVAPKKTAAWQKKEKAKDEPIVMVETKATKKKPAK
NT seq 2343 nt   +upstreamnt  +downstreamnt
atgaaacgtatgctttttaatgcaacccaatcagaagaattacgagttgcgattgtagat
ggtcaaaaattaatagatctagatattgaacgcggaagtcgcgctttaaagaaaagtaat
atctataaaggcattgtgactcgagtggaaccttcgcttgaagctgcttttgtaaactac
ggtgcagagcgtcatggctttcttcctttcaaagaaatttcaccgcaatactttaaagac
tcaactcaaaatctccctcgcattcaagacgtcattgaagaaggtcaagaaatcattgtc
caagttacaaaagaagaacgtggcaacaaaggtgccgcgctttcaagctacctttctctt
gcaggacgatatatcgtattaatgcccaataatcccgatggcggaggtgtttcaagacgt
gttgaaggtgaagagcgcaaagaattccgcgatcatatttcaaacttagatatcacagaa
ggtatgagtgttattggtcgaactgcgggtgtgggttcctctcttgaagagctgcagtgg
gatttaaattatttaaaacaactgtggacagcgattgaagaagcatctcaaggccaatca
ggcgcattcctcatttatcaagaaggcaatcttgttattcgtgccatcagagactacttt
catcctgagataggtgaaattctcattgatgctcaagagatttatgatcaagcgacacaa
tttatgaatcatgtgatgccaaattatgtagatcgcgtaaaactctatgaagatgaagtt
tctttattttctcgcttccaaattgaacatcaaattgaatctgctttttcaagagaagtg
agattaccttctggtggcgctattgtgattgaccatacagaagctcttgtttctatagat
gtgaactcatcaagagccactaaaggaagcgatattgaacacacggcatttaatacaaat
attgaagctgctgaagaagtagctaaacagttaagacttcgcgacttaggcggcctaatt
gtcattgacttcattgatatggaaagccaaaaaaatcaacgcgaagtagaaaaccgattt
agagatgcacttcatcacgatcgcgcacgagtccaaactggaaaaatttcacgctttgga
ttactcgagctttctcgtcagcgacttcgtccaagtatcggcgaatcaagcaatagttta
tgtactaaatgtaatggtactggctcaattagagatattcaatcatcggcattacatatt
cttcgtatgattcaagaagaagccatgaaagaacataatgcaactatttcagctcaattg
cctattgaagttgctacattccttctaaatgaaaagcgctcagatatatacagtctcgaa
cagcgcttaaaagttgaaattattttaatccctaataagcatcttgagtccccaaattat
tcaatctcaagtgctaaacaagaagatattgctaatcaatctaagcctagttaccaaatg
atggagtctcttaatgaaggtaaccaagttttaaattataaacaagcctctagtgaacca
aaacaagagcctttagtaaaaggcatcgttcctgatacccctgctccaacaggatcggga
aaaccaaataaaacattatttggattctttaaaaatcttattgctggtgatgatgaaaat
actcaaaattctagtgaagaaaaaatagaagtttcagaaacgacagaaaataatcgtcca
cgtccgcaaaataataatcgaggacgtaataatcgcaatcaaaaatttaaacagcagcat
aataataaaaaacctcaaggagaggcaaaaccttctgaaacagatttaacgcttccttca
gaaaaaacatctcctcctgaaacacgacctaatcaagataacaatagacgtggacgaaac
aatcacaatagtcgcggtcgttttaacaaagatcgcggaacaagatcgaatcaaggtcca
aatgattttgagaaaaaagctttagcatctcaagatgcgccaactttaaataaatctgct
cctgaagcaagggtccctcaggtcacaaaatcagagcctaagccaattgaagcatccaaa
aaacctactcctcccaaacctagaaaaagagtagaagaaaaaccagttgatctaaaagca
gtcggtcttgagcttgttgagacaaaagctaaatcgaaacctaaggctaaaaaagaagtc
gaagaaaaaccgaaaaaagtagcgccaaagaaaacagctgcttggcaaaagaaagaaaaa
gccaaagatgaacctatcgtaatggttgaaacaaaggctacaaagaaaaaacctgctaaa
tag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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