KEGG   Methylocystis bryophila: B1812_03590
Entry
B1812_03590       CDS       T04837                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mbry  Methylocystis bryophila
Pathway
mbry03030  DNA replication
mbry03410  Base excision repair
mbry03420  Nucleotide excision repair
mbry03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mbry00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B1812_03590
   03410 Base excision repair
    B1812_03590
   03420 Nucleotide excision repair
    B1812_03590
   03430 Mismatch repair
    B1812_03590
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mbry03032]
    B1812_03590
   03400 DNA repair and recombination proteins [BR:mbry03400]
    B1812_03590
Enzymes [BR:mbry01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     B1812_03590
DNA replication proteins [BR:mbry03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     B1812_03590
DNA repair and recombination proteins [BR:mbry03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     B1812_03590
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B1812_03590
   MMR (mismatch excision repair)
    DNA ligase
     B1812_03590
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      B1812_03590
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 HHH_5 DNA_ligase_ZBD PTCB-BRCT TF_Zn_Ribbon HALZ zf-TFIIB
Other DBs
NCBI-ProteinID: ARN80315
UniProt: A0A1W6MRX2
Position
784149..786251
AA seq 700 aa
MTSHRPISELSHSDAAIEHARLGEEIAEHDRRYYQEDAPVVSDADYDALRRRYEALEQRF
PELATPESLTRKVGAAPAEKFAKIRHAIPMLSLGNVFSDEEVVDFVARVRRFLRLADDAT
LIFTAEPKIDGLSCSLRYERGRLVSAATRGDGFEGEDVTANVRTLEEIPERLADKPPAVL
EVRGEVYMSHKDFAALNARQAAAEERLFANPRNAAAGSLRQLDPAITASRPLRFFAYALG
EVSETPGKTQFDVVEAFRRFGLPVNPLMTRCDSVEAMLARYREIETRRATLGYDIDGVVY
KVDDLALQERLGFVSRAPRWATAHKFPAERATTILRDIEINVGRTGVLTPIARLEPVTVG
GVVVSNATLHNEDEIARKDVRIGDTVVVQRAGDVIPQIVAVVAEKRPASAKPYHFPHVCP
RCGSAALREIDEKTGEAEVARRCTGSLVCPAQAVERLKHFCSRNAMDIEGLGDKQIEYFY
EEGLIKTPSDIFTLAQRDATSLTKLKNREGFGETSVRNLFAAIEARRNVPINRFIHALGI
RHVGETNARRLARHFAAFEDFRNAAQKLEPGGEGEAAFEGIDGIGPVVIEALRDFFAEPH
NEKELDRLLEQVTPTPMEAVESSSPVSGKTVVFTGSLESFTRDEAKAQAERLGAKVSGSI
SKKTDIVVAGPGAGSKLTKARELGVEVLTEEEWLALIGRG
NT seq 2103 nt   +upstreamnt  +downstreamnt
gtgacgagccatcggccgatttccgagttgtcgcacagcgacgccgccatcgagcatgcg
cgtctcggagaggagatcgccgagcacgatcgccgctactatcaggaagacgctcccgtc
gtttccgacgcggactatgacgcgctgcgtcggcgttatgaggcgctggagcagcgattt
cccgagcttgcgacgcccgagtccctgacgagaaaggtcggcgcggcgccggccgagaaa
ttcgcgaagatccgtcacgccatcccgatgctctcgcttggaaacgtgttttccgacgaa
gaggtcgtcgatttcgtcgccagggttcgccgctttctgcgacttgccgacgacgcgacg
ctcattttcacggcggagccaaagatcgacggtctctcctgctcgctgcgctatgaacgc
ggccgcctcgtctcggccgcgacgcgcggcgacggcttcgagggcgaggacgtcaccgct
aatgtccgcacgctagaagagatcccggagcggctcgccgacaagccgcccgccgtgctg
gaggtgcgcggcgaagtctatatgtcgcacaaggattttgcggcgctcaacgcgcgccag
gccgccgcagaagagcggctcttcgccaatccgcgcaatgccgcggcgggctcgctgcgt
cagctcgacccggcgatcaccgcgagccgccccttgcgcttcttcgcctatgcgctcggc
gaggtcagcgaaacgccgggaaagacacagttcgacgtggtggaagccttcaggcgcttt
ggcctgcccgtgaatcccttgatgacgcgctgcgacagcgtcgaggcgatgctcgcgcgc
taccgcgagatcgagacgcgacgcgcgaccctcggctatgacatcgacggcgtcgtctac
aaggtcgatgacctcgcgctgcaggagcgcttgggcttcgtctcgcgcgcgccgcgctgg
gcgacggcgcataaatttcctgccgaacgcgcaacgacgattctgcgcgacatcgagatc
aatgtcggacgcacgggcgtgctcaccccaatcgcccgtctcgagccggtcaccgtcggc
ggcgtcgtcgtctcaaatgcgacgcttcataacgaggacgagatcgcgcgcaaggacgtg
cgcatcggcgacacggtcgtcgtgcagcgcgccggcgacgtgatcccccaaatcgttgcg
gtcgtggccgagaagcgaccggcgagcgcgaagccctatcattttcctcatgtctgcccg
cgttgcggctcggcggcgttgcgcgagatcgacgaaaagaccggcgaggccgaggtcgcc
cggcgctgcaccggctcgctcgtctgtccggcgcaggcggtggagcgcctgaagcatttt
tgctcgcgcaatgcgatggacattgaggggcttggcgataagcagatcgaatatttttac
gaagaggggctgatcaagacgccctccgacatcttcacgcttgcccaacgcgacgccaca
agcctcaccaagctcaagaaccgcgaaggcttcggcgaaacctcggtgcgcaatctcttc
gcggcgatcgaggcgcggcgaaacgtgccgatcaatcgcttcatccatgcgctcggcata
cgtcacgtcggggagacgaacgcgcgccggctcgcgcgtcacttcgccgccttcgaggat
ttccgcaacgccgcgcaaaagctcgagcccggcggcgaaggcgaggcggcgttcgaaggc
atcgacgggatcggccccgtcgtcatcgaggcgctgcgcgacttcttcgccgagccgcac
aatgagaaagagctcgatcgcctgctcgagcaagtcacgccgacgccgatggaggcggtc
gaatcctcctcgcccgtctccggcaagacggtcgtcttcaccggaagcctcgagtccttc
acgcgcgacgaagccaaggcgcaggcggagcggctgggcgctaaggtctccggctccatt
tccaagaagaccgatatcgtcgtcgcggggccgggcgccggctcgaagctcaccaaggcg
cgggagctcggcgtcgaggtgctcacggaagaggaatggctcgcgctgatcgggcgcggc
taa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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