KEGG   Methanococcoides burtonii: Mbur_0245
Entry
Mbur_0245         CDS       T00341                                 
Name
(GenBank) DEAD-box RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
mbu  Methanococcoides burtonii
Pathway
mbu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mbu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mbur_0245
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mbu03019]
    Mbur_0245
Enzymes [BR:mbu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Mbur_0245
Messenger RNA biogenesis [BR:mbu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Mbur_0245
SSDB
Motif
Pfam: DEAD Helicase_C UTP25 ResIII AAA_19 RraA-like AAA_30 P-loop_SecA AAA_22 Flavi_DEAD ERCC3_RAD25_C DUF2608 CMS1 AAA_11
Other DBs
NCBI-ProteinID: ABE51253
UniProt: Q12Z73
Position
218268..219659
AA seq 463 aa
MSFDNLNLIFPLQRALTEEGYTSPTPIQELSIPHLLDNRDMIGIAQTGTGKTAAFILPIL
QNMSAIHKKATPKKPRVLVLAPTRELAAQIGESFATYGKYTRYKHTVVFGGVGQTPQVRA
LSRGVDCLVATPGRLLDLIQQGHIKLSNVEYFVLDEADRMLDMGFLNDVNKIVDMLPKKR
QSLFFSATMSPEISTLARKMLSNPAQVEVTPQATTVERIEQFIFFVDSDNKNELLLHLLR
GEHLDCVLVFTRTKHRANKVTEMLNKSNINAGAIHGSKSQTHRTKTLQNFKSGQLRVLVA
TDIAARGIDIEDISHVINYDLPNIPESYVHRIGRTARAGAEGTAYSFCAADERDFLRDIE
KLTDMEIEVAEHNYHSEKAKNATGDAAKPAPKQQRGRTGSTGPKRGRGKKGEGKGGRSSS
ANKDSKNKDGRSENTNRGQAKSTSKKNSGRNSGRGAGKPKSSQ
NT seq 1392 nt   +upstreamnt  +downstreamnt
gtgtcatttgataatttaaatttgattttcccgcttcagcgggcattaaccgaagaagga
tatacatcacctactcccatacaagaactatccatcccccatctattggataatagggat
atgatcggtatcgctcagacaggaactggcaagacggctgcattcatattgccaattctt
caaaatatgtctgcaattcacaaaaaggcaactccgaaaaaaccacgagtactcgtgctt
gccccaacaagggaacttgcagcacagatcggggagagttttgccacttatggcaaatac
acccgttacaaacatacagttgtattcggaggtgtcggacagacaccacaggtaagagct
ctctcaagaggtgtagattgccttgtagcaactccgggcagactgctggatctgatacag
caaggacacatcaagctttcaaatgtagaatattttgtcctcgatgaagcggacaggatg
cttgacatgggtttcctcaacgacgtgaacaaaattgtcgatatgctgccaaaaaagcgt
cagtcccttttcttttcagccaccatgtccccggagatatctacacttgccaggaagatg
ctcagcaatcctgcacaggttgaggttactccgcaggcaacaaccgttgagcgcatagag
cagttcatctttttcgtggattcggataacaagaacgaattgcttttgcatttactaagg
ggcgaacatctggactgtgtcctcgtattcacacgtacaaagcaccgtgccaataaggtc
actgagatgcttaacaagagcaatatcaatgcgggtgctatccatggaagcaagtcccag
acccaccgtacaaaaacgcttcagaatttcaagtccggacaactgcgtgtactggtcgca
acagacatagctgcccgaggaattgatatcgaggacatatcccatgtaataaactatgac
ctgccgaatatccctgaaagctacgtgcaccgcataggacgtacagcaagagcaggagct
gaaggaacagcatactcattctgtgcagcggatgaaagggatttccttcgtgatatcgaa
aaactcaccgatatggagatcgaggtcgcagagcataattaccactccgaaaaagcgaag
aatgccacaggtgacgcagcgaagccagctcccaagcaacagagaggacgaactggaagc
accggacctaaaagaggtagaggcaaaaaaggagaaggcaaaggcggtagaagtagtagt
gctaataaggatagtaaaaataaagatggacgatccgagaacaccaatcgaggccaggct
aaaagtacatccaagaagaactcaggtcgaaattctggtcgaggcgcaggtaagcccaaa
agcagtcagtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (49)   

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