KEGG   Methanosarcina barkeri Wiesmoor: MSBRW_2247
Entry
MSBRW_2247        CDS       T03839                                 
Name
(GenBank) putative exosome complex RNA-binding protein 1
  KO
K03679  exosome complex component RRP4
Organism
mbw  Methanosarcina barkeri Wiesmoor
Pathway
mbw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mbw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSBRW_2247
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mbw03019]
    MSBRW_2247
Messenger RNA biogenesis [BR:mbw03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MSBRW_2247
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     MSBRW_2247
SSDB
Motif
Pfam: KH_6 ECR1_N KH_1 RRP4_S1 S1 RRP40_S1 KH_2 Peptidase_U57
Other DBs
NCBI-ProteinID: AKB51500
UniProt: A0A0E3QMD7
Position
complement(2903975..2904757)
AA seq 260 aa
MDKKIVIPGDLISENSKKAGYGTYVKNDKIYSLFCGIENLKEDKVGVIPLAGVYIPSAND
VVIGIVIVVTPSNWIMDIASPYDGLFHVSEYPRRIESREMHEVLNVGDSIILRVKDVDNS
MKVELALRDSSFHKLKTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI
DGKDDDVELLSKALRKIEAEAQRSGLTDRIYNFLKNERSKQKESKPAKFFKSGKKEVKLP
KEDHSEEIYRKIDVLLDPNN
NT seq 783 nt   +upstreamnt  +downstreamnt
atggataaaaaaatagtgatccctggtgacctgatatccgagaattcgaaaaaagctgga
tacgggacttatgtcaagaacgacaagatctattctttattttgtggcattgaaaatctc
aaagaagataaagttggagtgatccctcttgcgggagtttatatcccttccgcaaatgat
gtggtgatcgggatcgttattgtggttactccatccaactggataatggatattgcttct
ccttatgacggcctgttccatgtatccgagtatcccagaagaatagaatcccgggagatg
catgaagttctgaatgtaggcgactctataatccttagagtaaaagatgtagataattcc
atgaaagtcgagcttgcccttagagattcgagcttccataaattgaaaacaggtcagatc
gttgaagttgagcctgtgaaagtcccacgtgtgataggacacggtggttccatgatctca
atgctgaagaaagaaacaaactgcagcattttcgttggccagaacggcagaatatggatc
gatggaaaggacgatgatgtggagcttttaagtaaggctctccggaagatcgaagccgaa
gcccagcgttccggattgacggacaggatctacaactttttgaaaaatgagcggagcaag
cagaaagagtcaaagcccgccaagttttttaaaagtggtaagaaagaggtaaagttgcca
aaagaagatcattccgaagagatttacaggaagatcgatgtgttactggatccaaataac
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

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