KEGG   Methanosarcina barkeri Wiesmoor: MSBRW_3552
Entry
MSBRW_3552        CDS       T03839                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
mbw  Methanosarcina barkeri Wiesmoor
Pathway
mbw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mbw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSBRW_3552
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mbw03019]
    MSBRW_3552
   03400 DNA repair and recombination proteins [BR:mbw03400]
    MSBRW_3552
Enzymes [BR:mbw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     MSBRW_3552
Messenger RNA biogenesis [BR:mbw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     MSBRW_3552
DNA repair and recombination proteins [BR:mbw03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      MSBRW_3552
SSDB
Motif
Pfam: RQC DEAD Helicase_C HRDC RecQ_Zn_bind HTH_40 Helicase_Sgs1 ResIII
Other DBs
NCBI-ProteinID: AKB52805
UniProt: A0A0E3QR26
Position
4624506..4627181
AA seq 891 aa
MKASKRELEPMPSLSARMYSALHQYFGYTSFRPLQEEIIKDVLERKDVFVLMPTGGGKSM
CYQLPALLMEGVTVVVSPLISLMKDQVDGLEANGIAAACMNSAQSARENRDVKTAFLENR
LKVLYVAPERLMMPGTLAFLKKGKVSLLAIDEAHCISEWGHDFRPEYRKLKLLRDPKTGF
PDIPIIALTATATERVREDIISQLNLHLPPEKGPYVASFNRKNLYYEVRPKKETFSEITD
YLRRHRGEAGIIYCQSRNSVEALTKKLNLAGFRALPYHAGLSDTERNRNQEMFIKDDVEI
IVATIAFGMGIDKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIE
YFISQKTNEKEKDISLVQLRQMVAYCEGNKCRRQTLMEYFGEELSEPCGNCDCCLTPKDT
FDGTEAAKKFITCVQELNQRFGTNYVIDVLTGSKNKKIRHNRHERLKSHGSGLEFTKEQW
KSLASEMINTGLLDVSGTKYPLLKLNAMSRKILKGLEQVELVCPEGFVPEAEESFMPSTV
AGTKGKKADDLSSSEEEVFPEKFSVASDILKASEARKTIISEKEPDPILFERLKALRKKI
SLKRNLPPYIVFSDTSLKEMATRFPHNLEEFHSITGVGEHKLRKYGDIFLKEIENYCRDY
SLVPAEKPADKPAEKPEQLEVACKDSEQEGISSKEIVQNDENPKAEVEIFGTKMSDPESD
TINSLEACNLQAKKTRYLDTSIQDWSERNSSACGFREIDSATISPELEASSVTRADSPTS
GSFETDSLQRTFSLFTKGLGIDEIADIQGTNTRAIFRQLEQLTLSGNVKGIGGLLPPERQ
KQINATLKSLEIELDSLLRTRLGENCQEEEMKFIRALLLSRICYSQSEDGK
NT seq 2676 nt   +upstreamnt  +downstreamnt
ttgaaggcaagtaaacgtgagcttgagccaatgccttccctgtccgctagaatgtattca
gccctgcaccagtattttggatacacttcctttcgcccattgcaggaggaaattatcaag
gatgttctggagaggaaagatgttttcgtgctcatgcctaccggcgggggcaagtcgatg
tgttatcagttgcctgcccttctcatggaaggcgttactgttgttgtgtctcctctgatt
tccctgatgaaagaccaggttgacgggcttgaagcaaacgggattgctgcagcctgcatg
aacagtgcccagagcgccagagaaaacagggatgtaaaaacggcttttctcgaaaaccgg
ttaaaagttctttacgttgctcctgaaaggcttatgatgccaggaacccttgccttttta
aagaaaggaaaggtcagcctcttggcaatcgacgaagcgcactgcatttccgagtggggg
catgatttccggcctgagtacaggaaattgaaacttttgagggatcctaaaacaggcttt
cctgatatcccaattattgcgcttacggcaacagccacagaaagggttcgagaagatatc
atatcacaactcaatcttcatcttcctccggaaaaaggtccttacgtagccagttttaac
cggaaaaacctttactatgaagtcaggccaaagaaagagactttttccgagattactgac
tacctgcgcaggcatagaggtgaagcaggaattatttactgtcagagtcgaaatagtgtc
gaagcacttacaaaaaaactgaaccttgcgggtttcagggcccttccctaccatgcgggt
ctttcggataccgagagaaaccgaaaccaagagatgttcataaaagatgacgtggaaatc
atagtagctacaatcgcttttggaatggggattgataagtccaacgtacgttttgtaata
cactatgaccttcccagaaatcttgagagctactatcaggaaaccggtagaggaggaagg
gatggaagcccatgcgaatgtatcctttttttcagcaggggggaccgtttcaagattgag
tactttatttcacagaagacaaatgaaaaggagaaggacatttctctagtgcagttaagg
caaatggtagcttattgcgagggaaataaatgcaggcgtcagaccttgatggagtacttt
ggtgaagagctctcagaaccctgcgggaattgtgactgctgccttactccgaaagatacc
tttgacggaactgaagctgcaaaaaaatttataacctgcgtccaggaactgaaccagcgc
tttggtactaactatgttattgatgtcctcacaggctcaaagaataaaaaaatccggcac
aaccgtcatgaaaggttgaaaagtcatggcagtggcctggagttcacaaaagaacaatgg
aaatcattagcttccgaaatgataaacaccggtcttctggacgtaagtgggacaaagtat
cctttattgaagcttaacgccatgagcagaaaaatactgaaaggtctggaacaagtagaa
cttgtctgccctgaaggctttgttcctgaagctgaagaaagtttcatgccttctacagtg
gccggtacaaaaggcaaaaaagccgacgatctaagttcctctgaggaagaggtttttcca
gaaaaattttcagttgcttctgacatcctgaaagcgtcagaggcgagaaaaactataata
tccgaaaaagagcctgaccccatcctttttgagcggttaaaagctctgagaaagaaaatt
tctctaaagagaaatcttcctccttacattgttttctctgatacttcccttaaggaaatg
gctacaagatttccgcataaccttgaagagttccattctattacaggagttggagaacat
aagctaaggaaatacggggacatttttctcaaggaaatcgaaaactactgcagagattac
agtttggttcccgctgaaaagcctgctgacaaacctgctgaaaaacctgaacaattagag
gttgcttgtaaagactctgaacaagaaggaataagctcgaaagaaattgttcaaaatgat
gaaaatcccaaagctgaggtcgagatattcgggactaaaatgtccgatcctgagtctgac
accatcaacagcttggaagcctgcaacttacaggcaaaaaagacaaggtatctggatacg
agcattcaggattggtcagagcggaattcttcagcatgcggcttcagggaaatagattcg
gcaacgatctcgcctgagttagaggcttcaagtgtcaccagagcggattctcctacctcc
ggttcttttgaaacggattctctgcaaagaactttctctctttttacgaaagggcttgga
atcgatgaaattgctgacatccagggcacgaatactagagccattttcaggcaacttgaa
cagctcactctttctggaaacgtcaagggtattggaggacttttacctcctgaaagacaa
aagcagataaatgctaccctgaaaagcttagaaattgagctggattccctgcttcggaca
agattgggtgaaaactgccaggaagaagaaatgaaatttatcagggctctccttctgtcc
agaatctgctattctcagtctgaagacggtaagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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