KEGG T03381: MC25239

Moraxella catarrhalis 25239: MC25239_00978

Entry

MC25239_00978     CDS       T03381

Symbol

mfd

Name

(GenBank) Transcription-repair-coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

mcat Moraxella catarrhalis 25239

Pathway

mcat03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:mcat00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    MC25239_00978 (mfd)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mcat03400]
    MC25239_00978 (mfd)
Enzymes [BR:mcat01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     MC25239_00978 (mfd)
DNA repair and recombination proteins [BR:mcat03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      MC25239_00978 (mfd)

SSDB

Motif

Pfam:

TRCF DEAD Helicase_C UvrB_inter CarD_TRCF_RID MFD_D3 ResIII SNF2-rel_dom ERCC3_RAD25_C UB2H RecG_dom3_C

Other DBs

NCBI-ProteinID:

AIT43399

Position

complement(1065199..1068753)

AA seq 1184 aa
MIDTFKPKLDLPTKANFKTTLPLLGGADLSFWLALAAKSEERLIVMIANHQNELNQLDTE
LSFFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGVLLVSTQTLMQRIAPPS
WLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVGQSLPFR
LDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQAGMNTHHAQKLPSSAKITEFRLLPA
REFPLEEGKEMFRQNFASLFPNASARKIEFYNDVMAAIAPQGIEFYAPLFFELDAWMKTG
NLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSRAHDKSLPIMPPDYLFLANNEFHQV
LKAYPRVVINTNHDTAKIGAMESLPPPILPINHQAAKPLSELLSFIKSGQVPILLVAESA
GRREIILELLKDKVAVKVVDNYQEFINNLDDFNTDCIALSVAPIERGLWLRDETGGLCII
SETQIFGRQVLQTRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEG
EQEFIHLKYADDASIYVPITNLALIGRYSGSDLQTVSLSKIGSGKWEKAKLKALEQIHDV
AAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQNKPMDR
LICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFADWPIKIESLS
RFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKA
LQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILR
EILRGGQVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNV
LVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYLMVPSLKGLSS
DAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLERATN
AIKQGKTPSLATPLDLVSDIDIHASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRT
EMIDRFGTLPTQTQNLFAVHRIRIRAKALGITKIDATQTTISIEFRADTPIDGLAIIKLI
QSNDGYRMNGATAIRYTSQELMDTQARIDKVNELLLYFESTKTA

NT seq 3555 nt +upstreamnt +downstreamnt
atgattgatacatttaagcccaaattagatttgccaaccaaggcaaattttaagacaact
ttacccttacttggcggtgctgatttgagtttttggcttgcactggcagccaaaagtgaa
gagcggctgattgtgatgatcgccaatcatcaaaatgaactgaatcagttggatactgag
ctgtctttttttggcattgatgcacatgtttttccagattgggagattttggcttatgat
cagctgtctgttcatcaagacattatctcagagcgtattgctttactaacgagaatgcca
acaactggtgtcttattggtcagtactcagacattgatgcaacgtatcgcaccaccaagc
tggctgataggacagcattttgatttggctgtcggtgataaatttgatattcatgaacag
cgacttcgattaaccaaagcaggctatgtgcagacggagaatgtgtttgagccaggagaa
tttgcggttcgaggcagtattgttgatatttttgccgttggtcaaagcctaccttttcgt
cttgatttgtttgatgataacattgagacgatcaaattttttgatcctgacagtcagcgt
actttatccgataatgatttagctcagctaaaaaaagatgcccaagcaggcatgaatacg
catcatgcccaaaagctgccatcatctgccaaaatcaccgaatttcgcctgctgcctgct
agagaatttcccttggaagaaggcaaagagatgtttcgccaaaattttgcgagcctgttt
cctaatgccagcgcccgcaagatagaattttataatgatgtcatggcagccattgctcct
cagggaattgagttttatgcaccgttattttttgagcttgacgcatggatgaaaacaggc
aatttatttagctatttgcccgatgatacactggtggttagtcatgataatcttagtgct
tgccatgatgagtattatcagcaaatccaagcacgccatcattctcgtgcacatgataaa
tcattgccgattatgccgcctgattatttatttttggcgaataatgaatttcatcaagta
ttgaaagcctatcctagagttgttatcaacacaaaccacgatacggcaaaaattggtgcc
atggagagtttaccgccgccgattttgccgattaatcatcaagctgccaagcctttatca
gaactgctatcattcataaaatcagggcaagtaccgattttattggtcgctgaaagtgct
ggtcgccgtgaaattattcttgagctattaaaagataaagtcgctgtcaaagtggttgat
aattatcaagaatttattaataatttagatgattttaatactgattgtattgctttgagt
gttgcaccgattgagcgtggtctttggttgcgtgatgaaactggcggattatgcatcatc
tcagagacacaaatttttggtaggcaggtgcttcaaacacgccgtcgtcgtcaatcaagt
gtttcacaggcttttttgattaagtcggtaactgagttgaccgaaggggcgttggtggtt
catcttgaacatggcatcgggcgttatcaaggtttggtggtgctggatgtgggtgaaggt
gagcaagaatttattcatctaaaatatgccgatgatgccagtatttatgtacctattacc
aatttggcactgattgggcgatatagcggctcagatttgcagacagtcagcctgtctaaa
attggttcgggcaaatgggaaaaagccaagctaaaagctttggaacaaatccatgatgtt
gccgccgagcttttaaatgtacaggctcgtagaaatgctaaatcaggcatcagttttgat
attgatatgtctcaatatgagctatttgccagccaatttgcttttgaagaaaccatcgac
caagctgaagctatccatgccgtgatgcacgatatgaagcaaaataagccgatggatagg
cttatctgtggtgatgttggttttggcaagaccgaagtggcgatgcgtgcggcattcatt
gctgttcaggcgggctatcaagttgccgtacttgttccaacgacgcttttggcagggcag
cacgaggacagctttttaaatcgctttgctgattggcccattaagattgaaagtttatca
cgatttggcaataaaaaacatcaagatgccattttagcagggctggcagatggtacggtg
gatattgtgattggtacgcataagctcattcaggacgatgttaaattcaaacagcttggt
ttgatgattattgatgaggaacatcgttttggcgtacggcataaagagcgtattaaagca
ctacaaaccaatattgacagtttatcaatgactgccaccccgattccacgcaccttaaat
atggcgttatcgggcatgcaggatatttctatcattgccacaccacctgccagacgcttg
gcgattaagacttttttattacccaaatctgatgagacaatcaaagaagcaattttacgg
gagatactcaggggcggacaggtatattatctacataatgatgttgctagtatcgaggcg
gcagctgacacactgcgtgaattggtcggtgaagcacgagtagcggtagcacatgggcag
atgaatgagcgtgagctttcggtggtgatgaatgatttttatcataaaaagtttaatgtt
ttggttgctagcaccatcatcgagacaggtatcgatgtgcctaatgccaataccatcatt
attcaccgagcggataaatttggtatcgctcagttgcaccagttgcgtggtcgtgtgggt
cgtagccatcatcaagcatactgctatctgatggtgccatcattgaaaggattatcaagc
gatgccaaaaaacgcctaaatgccatcactagagccaacactttgggtgcagggtttatg
cttgccagtgaagatttggaaattcgtggtgctggggaaattttaggcaaagagcaatct
ggtaacatgcaaaccattggttttggcttatatatggatatgcttgagcgtgcgaccaat
gccatcaaacaaggcaagacaccgagtcttgccacaccactggatttggttagtgatatt
gatattcatgcatcggcactgatacctgatgagtatttgggtgatgtgcatgagcgtttg
gtattttataaaagaatcagtagcttagatgatgtcaatcagctcatagacattcgtact
gagatgattgacagatttggcacattacccacccaaacccaaaatttatttgcggtgcat
cgcattcgcatacgagccaaagccttagggattactaagattgatgcaacccaaaccacc
atcagtattgagtttcgtgccgatacgccgattgatggattggcgattattaagctgatt
cagtccaatgacggttatcgcatgaatggtgcaacggccatccgatacaccagccaagag
cttatggatacccaagctagaattgacaaggtaaatgagctgttactatattttgaatct
accaaaactgcctaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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