KEGG T02150: Mycch

Mycobacterium chubuense: Mycch_4291

Entry

Mycch_4291 CDS T02150

Definition

DNA ligase D/DNA polymerase LigD

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

mcb Mycobacterium chubuense

Pathway

mcb03410	Base excision repair
mcb03420	Nucleotide excision repair
mcb03430	Mismatch repair
mcb03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:mcb03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:mcb03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:mcb03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:mcb03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

392418079

NCBI-GeneID:

13143453

UniProt:

I4BNZ8

Position

complement(4500799..4503045)

AA seq 748 aa
MKLTNADKVLYPATGTTKGDVFEYYVRVAEAMLPHIAGRPVTRKRWPNGVEEGSFFEKQL
ASSAPEWLDRGTIVHKSGTTTYPVIDTAEGLAWIAQQASLEVHVPQWRFDDTGSVGPATR
IVFDLDPGEGVSMRQLCEVAHEVRDLITDIGLQTFPLTSGSKGLHLYVPLQDPISSRGAS
VLAKRVAQQLEQTMPKRVTATMTRSLRDGKVFLDWSQNNGNKTTIAPYSLRGREHPTVAA
PRTWEEIEDPKLRHLTYDEVLDRLERDGDLLAELDDPLPVPDRLTTYRSMRDTARTPEPV
PKQSPEVGNNDKFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPETPSVNHLAVHTEDH
PMEYLTFAGEIPKGEYGGGQVYVWDTGTYETEKFRDNPPDGPAKGGEVIVTLHGEKVEGR
YALIQTDGKNWLAHRMKDQKHPTFADLVPMLTTEGSVERLSKGQWAFEGKWDGYRILVEA
DHGKLTVRSRRGRDVTAEYPQFQAIAADLADHHVILDGEAVALDESGVPSFREMQNRARS
TRVEFWAFDILYLDGRSLMRAKYTDRRRVLETLAEGGGLIVPAAIEGDGPQALAYAEKKR
WEGVVAKKKDSTYQAGRRSSSWIKDKLWNTQEVVIGGWRQGNGGRTSGIGALMLGIPGEG
GLQFVGRVGTGFTEKELASLKETLTPLRSDESPFSARLPTQDAKGVTFVRPELVGEVRYS
ERTGDGRLRQPSWRGLRPDKGPGEVRWE

NT seq 2247 nt +upstreamnt +downstreamnt
gtgaagctgaccaacgcggacaaggtgctctacccggccacgggtaccaccaagggtgac
gtgttcgagtattacgtgcgcgtcgccgaggcgatgctgcctcacatcgccggccggccc
gtgacgcgcaagcgctggcccaacggcgtcgaggaaggatcgttcttcgagaagcaactg
gcctcgtcggccccggagtggctggaccggggcaccatcgtccacaagtcgggcaccacc
acctacccggtcatcgacacggccgaaggactggcctggatcgcgcagcaggcgtcgctg
gaagtgcatgtgccacagtggcgattcgacgacaccggttcggtgggcccggccacgcgc
atcgtgttcgacctcgatccaggcgagggggtgtcgatgcgtcagctctgcgaggtcgcc
cacgaggtgcgggacctgataaccgacatcggactgcagaccttcccgctgaccagtggc
agcaaggggctgcacctctatgtcccgctgcaggatccgatcagctcgcgcggcgcttcc
gtgctggccaagcgggtcgcccagcagctcgagcagacgatgcccaagcgcgtcacggcg
acgatgacccggagtctgcgcgacggcaaggtgttcctggactggagtcagaacaacggc
aacaagacgacgatcgcgccgtattcgcttcgcggacgcgagcatccgaccgtggcagca
ccgagaacgtgggaggagatcgaggatccgaagctgcgtcacctgacctacgacgaggtg
ctcgaccgactcgagcgagacggcgacctgctcgccgaactcgacgacccgctacccgtc
cccgaccggctgacgacataccggagcatgcgcgacaccgctcgtactccggagccggtc
ccgaagcagtcgccggaggtcggcaacaacgacaagttcgtcatccaggagcaccatgcc
cggcgtctgcactacgacttccggctggagcgcgacggcgtcctggtcagctgggcggtg
ccgaagaaccttccggagacaccgtcggtcaaccacctcgccgtgcacaccgaagaccat
ccgatggagtatctgacgttcgccggcgagatcccgaagggggaatacggcggcggacag
gtctacgtctgggacaccggaacctatgagaccgagaagttcagggacaacccgcccgac
ggtccggccaaaggcggcgaggtcatcgtcacgctgcacggcgagaaggtcgaaggccgc
tatgcgttgatccagaccgatggcaagaactggcttgcgcaccggatgaaagatcagaag
cacccgacgttcgccgatctggtgccgatgctgaccaccgaaggctcggtcgagcgactg
tccaaggggcagtgggcttttgaaggaaagtgggacgggtaccggatactcgtcgaggcc
gaccacggcaagctgacggtgcggtcccggcgaggtcgcgacgtgaccgccgagtacccg
cagttccaggcgatcgccgcggatctcgccgatcaccacgtgatcctcgacggggaggct
gtcgcgctcgacgagtcgggtgtgccgagctttcgcgagatgcagaaccgtgcgcgctcc
acccgcgtggagttctgggcgttcgacatcctctacctggacgggcgctccctgatgcgc
gccaagtacaccgaccgcaggcgcgtgctcgaaaccctggccgagggcggtggtctcatc
gtgcccgcagcgatcgagggggacggtccgcaggctctggcgtatgcggagaagaagcgg
tgggaaggcgtcgtcgccaagaagaaggactccacctatcaggccggccggcgttcgtcg
tcgtggatcaaggacaagctgtggaacacgcaggaagtcgtgatcggcggctggcgccag
ggcaacggcggacgcacgagtggaatcggtgcgctgatgctcgggatccccggcgagggc
ggtctgcagttcgtcggacgcgtcggcaccggcttcaccgagaaggagctcgcgtctctg
aaggagacgctcacgccgctgcgcagtgacgaatcgcccttcagtgcacggcttcccact
caagacgcgaagggggtcacgttcgtgcggccggagttggtgggggaggtgcgctacagc
gagcgcaccggcgatggccggctgcggcaaccgagttggcggggactgcggccggacaag
gggcccggcgaagtcaggtgggagtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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