KEGG   Mycolicibacterium chubuense: Mycch_4749
Entry
Mycch_4749        CDS       T02150                                 
Name
(GenBank) DNA topoisomerase I, bacterial
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
mcb  Mycolicibacterium chubuense
Brite
KEGG Orthology (KO) [BR:mcb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mcb03032]
    Mycch_4749
   03400 DNA repair and recombination proteins [BR:mcb03400]
    Mycch_4749
Enzymes [BR:mcb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     Mycch_4749
DNA replication proteins [BR:mcb03032]
 Prokaryotic type
  DNA Topoisomerases
   Mycch_4749
DNA repair and recombination proteins [BR:mcb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Mycch_4749
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim Toprim_4 Rep_1B
Other DBs
NCBI-ProteinID: AFM19449
UniProt: I4BQ92
Position
complement(4995254..4998088)
AA seq 944 aa
MADRDRASGGNGVDEPRARRANGNVRRLVIVESPTKARKIAGYLGSNYIVESSRGHIRDL
PRAAADVPAKYKSEPWARLGVNVDEDFEPLYIISPEKKSTVAELKDKLKSVDELYLATDG
DREGEAIAWHLLETLKPRIPVKRMVFHEITEPAIRAAAEDPRDLDNDLVDAQETRRILDR
LYGYEVSPVLWKKVAPKLSAGRVQSVATRIIVSRERERMAFRSAGYWDVTAELDASVSDA
QASPPTFTAKLNTVDGRRVATGRDFDSLGAVRKPDEVLVLDEAAANALATGLRGAQLAVS
SVEQKPYTRRPYAPFMTSTLQQEAGRKLRFSSERTMSIAQRLYENGYITYMRTDSTTLSQ
SAIDAARNQARQLYGEEYVHPSPRQYTRKVKNAQEAHEAIRPSGDGFQTPGQLHAQLDTD
EFRLYELIWQRTVASQMADARGTTLSLRIAGQAGTGEQVVFNASGRTITFPGFLKAYVES
LDDQAGGEADDAESRLPNLTQGQRVDAKELTADGHTTSPPARYTEASLIKALEDLGIGRP
STYSSIIKTIQDRGYVHKKGSALVPSWVAFAVTGLLEQHFSRLVDYDFTAAMEDELDEIA
AGHERRTNWLNNFYFGGEHGVDGSIARAGGLKKLVGGNLEEIDAREVNSIKLFDDAEGRA
INVRVGRNGAYLERMVLDEDGELKPQRANLSDDLTPDELTLELAEKLFATPQEGRSLGVD
PETGHEIVAKDGRYGPYVTEVLPEPPGDEGEAGSPAKKGKKPTGPKPRTGSLLRSMDLET
VTLEDALKLLSLPRVVGVDPANGEEITAQNGRYGPYLKRGTDSRSLATEQQIFDITLDEA
LKIYAEPKRRGRQGAATPPLRELGNDPVSGKPMVIKDGRFGPYVTDGETNASLRKGDDVL
SITDERASELLADRRARGPVKRTKKAPAKKAAKKAGAKKAAKKA
NT seq 2835 nt   +upstreamnt  +downstreamnt
gtggctgaccgggaccgcgcgagcggaggaaacggcgtcgacgagccgcgtgcgcgcaga
gcgaacggtaacgtccggcgactcgtgatcgtcgagtcgcccaccaaggcgcgcaaaatc
gctggttatctgggctccaactacatcgtcgagtcgtctcgtgggcacatccgcgacctc
ccgcgggccgcggccgacgtgcccgcaaagtacaagtccgaaccgtgggcccggctcggg
gtcaacgtcgacgaggacttcgaaccgctctacatcatcagcccggagaagaagagcacc
gtcgccgagctgaaggacaagctcaagagcgtcgacgagctctacctcgccacagacggt
gaccgtgagggcgaagcgatcgcctggcacctgctcgagaccctcaagccgcgcatcccg
gtcaagcggatggtgttccacgagatcaccgagccggcgatccgtgcggccgccgaggac
ccgcgtgacctggacaacgacctggtcgacgcgcaggagacccgccgcatcctggaccgg
ctgtacggctacgaggtcagtccggtgctgtggaagaaagtcgcgccgaagctgtcggcg
ggccgggtgcagtcggtggcgacgcggatcatcgtctcgcgcgagcgcgagcggatggcg
ttccgcagcgccgggtactgggacgtcaccgccgagctcgacgcgagcgtgtccgacgcc
caggccagccctccgacgttcaccgccaagctcaacaccgtcgacggccgccgggtggcc
accggccgcgacttcgactccctgggcgcggttcgcaagcccgacgaggtgctggttctc
gacgaggcggcggccaacgcgctggccaccgggctgcgcggcgcacagctggccgtctcg
tcggtcgagcagaagccgtacacccgccgtccgtacgcgccgttcatgacctcgacgttg
cagcaggaggcgggccgcaagctgcgcttctcctcggagcgcacgatgagcatcgcgcag
cgcctctacgagaacggctacatcacctatatgcgaaccgactcgacgacgctgtcgcag
tcggccatcgatgcggcccgcaaccaggcccgtcagctgtacggcgaggagtacgtgcat
ccgtcgccgcgtcagtacacccgcaaggtcaagaacgcccaggaggcgcacgaggcgatc
cgtccgtccggtgacgggttccagacgcccgggcagctgcacgcccagctcgacaccgac
gaattccggctctacgagctgatctggcagcgcaccgtggcctcccagatggccgacgcg
cgcggcaccacgctgagcctgcgcatcgccggccaggccggtaccggagagcaggtcgtc
ttcaacgccagcggccgaaccatcacgttccccggcttcctgaaggcctacgtcgagagc
ctcgacgaccaggccggcggtgaggccgacgacgccgagagccggttgccgaacctgacg
cagggccagcgggtcgacgccaaggagctgaccgccgacgggcacaccaccagccccccg
gcccgctacacagaggcgtcgttgatcaaggcgctcgaggatctcgggatcggccgtccg
tcgacgtacagctcgatcatcaagacgatccaggaccgcggctacgtccacaagaagggc
agcgcgctggtcccgtcgtgggtggcgttcgccgtcaccggtctgctcgaacagcacttc
agtcggctggtcgactacgacttcaccgccgcgatggaagacgagctcgacgagatcgcc
gcgggccacgagcgaaggaccaactggctcaacaacttctacttcggcggtgagcatggc
gtcgacgggtcgatcgcacgcgccggtggccttaagaagctggtgggcggcaacctcgaa
gagatcgacgcccgagaagtcaactccatcaagcttttcgacgacgccgaggggcgggcg
atcaacgtccgcgtcggacgaaacggcgcctacctcgagcgcatggtgctcgacgaggac
ggcgagctcaagccgcaacgcgcgaatctcagcgacgacctcacgcccgacgagctgacc
ctcgagctggccgaaaagcttttcgcgacaccgcaagagggtcgatcgctcggcgtcgat
ccggagacgggtcatgagatcgtggccaaggacggccggtacgggccgtacgtcaccgag
gtcctgccggagcctcccggcgacgagggtgaggcgggatcaccggccaagaagggtaag
aagccgactggtcccaagccgcgcaccggttcgctgctgcgctcgatggacctggagacg
gtgacgctcgaggacgcgctcaagctgctgtcgctgccgcgtgtggtcggcgttgatccg
gccaacggtgaggagatcaccgcgcagaacgggcgttacggcccgtatctcaagcgcggc
accgactcccggtcactggccaccgagcagcagatcttcgacatcacactcgacgaggcg
ctgaagatctacgccgagcccaagcggcgcggcaggcagggcgcggcgacaccgccgctg
cgggagctgggcaacgatccggtctccggtaagccgatggtgatcaaggacggccgcttc
ggcccgtacgtcaccgacggcgagaccaacgcgagtctgcgcaagggcgacgacgtgctg
tcgatcaccgacgagcgtgcctccgagctgctcgccgaccgccgggcgcggggaccggtg
aagcgcacgaagaaggcgccggcgaagaaggcggccaagaaggccggggcgaagaaggcc
gccaagaaggcctga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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