KEGG   Mycoplasma crocodyli: MCRO_0331
Entry
MCRO_0331         CDS       T01205                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
mcd  Mycoplasma crocodyli
Pathway
mcd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mcd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    MCRO_0331 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mcd03021]
    MCRO_0331 (rpoB)
   03400 DNA repair and recombination proteins [BR:mcd03400]
    MCRO_0331 (rpoB)
Enzymes [BR:mcd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     MCRO_0331 (rpoB)
Transcription machinery [BR:mcd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     MCRO_0331 (rpoB)
DNA repair and recombination proteins [BR:mcd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      MCRO_0331 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 DUF5887
Other DBs
NCBI-ProteinID: ADE19793
UniProt: D5E5D1
Position
368768..372382
AA seq 1204 aa
MAELNYRISKFGPKTSRRDYSVTKYSLPVFDILATNKESFDKFLKEGIEEALMEHYPIEA
SNKQVKLDYIKKSLRIEYPYKKGPSEGEEIRKCKAKGMNFSARIYAELQREITETGEIKR
DEVLLGEIPMITSGGSFIINGSEKVIVSQLIRSPGAYFGRGVRNKQSDDLFNKVEVLPRI
GSWLEISHKITTSNIDVVKIKIDKNKNVNLATFLGALGLNTKMMYKYFGNSKELEETITK
DKFVNQENLSDAEITDLCQEELFRWLRKGDRISDEAKKTLLPSILFDKKRYNLSITGRYM
LNNKLSLVDRITNTYLAEDIKNKNNEVVFHNGTFIDYKLALDIQKSFDEGEVATVYIDTL
RGENVYYKLVDQNKALAKRCKIAIVKVYPNRKWMEDADKKPVIVIGNDPKSVEQHLLISD
IVAVVGYYFNLIDGVGQDDDPDSMVNKRIVSVGELLQNQLNVALAKLEKTTRERMGAKET
EKVTSKNVTNNKLLTNQMKTFFNSSKLSQFMDQINPLAEVSNKRRVTSLGPGGLNRDTAQ
FEVRDVHSTHYGRICPIETPEGPNIGLILNYATYAKVNEHGFLQTPYFKVNNGVIDYEDL
RYLTASEETGLAFAQSSVRVDDTNKIIEKTLTIRKDYNYIIGKPSEIDFIEVSSKQMVSV
AAAAIPFLENDDANRALMGANMQRQSVPLIEAEAPLVATGIEKDIALYSAYNFRAKNDGV
VSYVDSFKIYVKTHDKGTQDKYYLKNFERSNQGTVICQKSIVKVGDEVKKGDLLVDGSSF
KDGELALGKNVLVAFTTYNGYNYEDAVILNERLVKDDVYTSIHIEEQTVLFRSSKAGDDK
LTADIPNTSKFSTRNLDEYGIVRVGSEVIAGDVLVGRVSPKGEENPSQEEKLLMAILQQR
PLNDKDTSLRVKNGHNGTVIGIEVLSRETGDILEDGIDKIVKVSIAQKRKIKVGDKMAGR
HGNKGVISVVLPEEDMPYLEDGTPVDIMLNPQGVPSRMNIGQVLELHLGMAARKLNTKFV
TPSFDGVKKSDIEDVLEEAGLDKSGKAYLIDPITGKKLDKPVSVGVMYMLKLSHMVDDKM
HARSVGPYSLITQQPLGGKSQNGGQRFGEMETWAIESYGATNVLQEILTYKSDDIQGRNI
LYASLATGKELPKPGIPESFNVLSYELRGLGIKLETKEAEILEDGDDTDIVQHWESEGVV
NEEY
NT seq 3615 nt   +upstreamnt  +downstreamnt
atggcagaattaaattacagaattagtaaatttggtcctaaaacatcaagacgtgattac
tcagtaactaagtattcacttccagtttttgatattctagcaaccaacaaagaaagtttt
gataaattcttaaaagaaggtattgaagaagctttaatggaacactatccaattgaagcg
tctaacaaacaagttaagttagattacatcaaaaaatctttaagaattgaatacccttac
aaaaaaggaccatcagaaggtgaagaaattagaaagtgtaaagctaaaggaatgaacttt
agtgcaagaatctatgctgaactacaaagagaaatcactgaaacaggagaaatcaaaaga
gatgaagttctcttaggagaaattccaatgatcactagtggtggaagtttcattatcaat
ggttcggaaaaagttatagtaagtcagttgattagatcacctggtgcttattttggtcgt
ggagttagaaataaacaatctgatgacttgtttaacaaggttgaagttttaccaagaata
ggttcatgacttgaaatttcacataaaattacaacttcaaatattgatgttgtaaaaata
aaaatcgacaaaaataaaaatgttaatttagcaacgtttttaggtgcgttaggtttgaat
acaaaaatgatgtacaaatattttggtaatagtaaagaacttgaagaaactattacaaaa
gataaatttgtaaatcaagagaatctaagtgatgcggaaataactgatttatgtcaagaa
gaattgtttagatgacttagaaaaggtgatcgtatttctgatgaagccaaaaaaactctt
ttaccaagtattttatttgataaaaaaagatataacttgtcaataacaggtcgttatatg
ttaaataataaactttcattagttgatagaattacaaatacatatttagctgaagatata
aaaaataaaaacaatgaagttgttttccataatgggacatttattgattataaactagca
cttgatattcaaaaatcatttgacgaaggtgaagttgctactgtttatattgacacttta
agaggtgaaaatgtttattacaaacttgttgatcaaaataaagcattagcaaagagatgc
aaaattgcaattgtaaaagtttatccaaatcgtaaatgaatggaagatgctgataaaaaa
cctgttatcgttattggtaatgaccccaaatctgtcgaacaacaccttttaatttctgat
attgttgctgttgttggttactattttaacttaattgatggtgtaggtcaagatgatgat
cctgattcaatggttaataaacgtattgtttctgttggtgaattattgcaaaaccaactt
aatgttgcattagcaaaattggaaaaaacaaccagagaaagaatgggagctaaagaaaca
gaaaaagttacttcaaaaaatgttactaacaataaattattaactaatcaaatgaaaact
ttctttaactcttcaaaactttcacaatttatggatcaaattaacccacttgcagaagtt
tctaataaaagacgtgttacttcgctagggccaggaggtcttaacagagatactgctcaa
tttgaagttcgggatgttcattcaactcactatggaagaatttgtccaattgaaactcct
gaaggacctaacatcgggcttattcttaactatgctacttatgcaaaagttaatgaacac
gggttcttacaaactccttattttaaagttaataatggtgtaattgattatgaagattta
agatacctaaccgcatctgaagaaacaggattagcttttgctcaatcttcagtaagggtt
gatgatacaaacaaaataattgaaaaaactttaacaataagaaaagattacaattatatt
attggtaaaccaagtgaaatagattttatcgaagtctcatcaaaacaaatggtttctgtt
gctgcagcagctattccttttcttgaaaacgatgatgctaaccgtgcacttatgggtgct
aacatgcaacgtcaatcagttccgcttatcgaagctgaagctccattagtcgcaactggt
atcgaaaaagacatagctctatattctgcttataacttccgagcaaaaaacgatggagtt
gttagttatgttgattcttttaaaatctatgttaaaacacatgataaaggaactcaagat
aaatattatttaaaaaactttgaacgtagtaaccaaggaacagtaatttgtcaaaaatca
attgttaaagttggtgatgaagttaaaaaaggtgatttattggttgatggttcatcgttt
aaagatggtgaattagcacttggtaaaaacgttttagttgcttttactacatataatgga
tataactatgaagatgccgttattcttaatgagcgtcttgttaaagatgatgtatataca
tcaatacatatcgaagaacaaacggttttatttagatcgagtaaagctggtgatgataaa
ctaactgctgacattccaaatacatcaaaattctcaacaagaaacttagatgagtatgga
attgtaagagttggtagcgaagttattgccggagatgttttggttggaagagtttcgcca
aaaggtgaagaaaacccttcacaggaagaaaaacttttaatggcaattttacaacaaaga
cctctaaacgacaaagatacttctttaagagttaaaaatggtcacaatggaacagttata
ggaattgaagttttatcaagagaaacaggagacatcctcgaagacggaattgataaaata
gttaaagtttctattgcccaaaaacgtaaaattaaagttggtgataaaatggctggtcgt
catggaaacaaaggggttatatctgttgttttacctgaagaagacatgccatatcttgaa
gacggaacaccggttgatattatgcttaatcctcaaggggttccttctcgtatgaatata
ggtcaagttttagaacttcacttaggaatggctgcaagaaaattaaacacaaaatttgtt
acaccatcttttgatggagttaagaaaagtgatatagaagatgttcttgaagaagcggga
cttgataaaagcggtaaagcttatttaatcgatcctattacaggtaaaaaattagataaa
ccagtttcagttggagttatgtatatgctaaaacttagccatatggttgatgacaaaatg
catgcacgtagtgttggcccatattcgcttatcacacaacaaccattaggaggaaaatct
caaaatgggggacaaagattcggagaaatggaaacgtgagctattgaatcttatggagca
acaaatgtgttacaagaaatcttgacatacaaatcagatgatattcaaggtcgtaacata
ttatatgcatcattagcaacaggtaaggaattacctaaacctggaattcctgaatcattt
aacgttttaagttatgaattaagaggtttaggaattaagcttgaaacaaaagaagctgaa
attcttgaagatggtgatgatactgatatagttcaacactgagaaagtgaaggagtagtt
aatgaagaatactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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