KEGG   Mycoplasma crocodyli: MCRO_0663
Entry
MCRO_0663         CDS       T01205                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mcd  Mycoplasma crocodyli
Pathway
mcd03030  DNA replication
mcd03410  Base excision repair
mcd03420  Nucleotide excision repair
mcd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mcd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MCRO_0663 (ligA)
   03410 Base excision repair
    MCRO_0663 (ligA)
   03420 Nucleotide excision repair
    MCRO_0663 (ligA)
   03430 Mismatch repair
    MCRO_0663 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mcd03032]
    MCRO_0663 (ligA)
   03400 DNA repair and recombination proteins [BR:mcd03400]
    MCRO_0663 (ligA)
Enzymes [BR:mcd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     MCRO_0663 (ligA)
DNA replication proteins [BR:mcd03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     MCRO_0663 (ligA)
DNA repair and recombination proteins [BR:mcd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     MCRO_0663 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MCRO_0663 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     MCRO_0663 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      MCRO_0663 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 PTCB-BRCT RNA_pol_A_CTD BRCT_2 DNA_ligase_ZBD DASH_Dad3
Other DBs
NCBI-ProteinID: ADE19918
UniProt: D5E675
Position
782387..784360
AA seq 657 aa
MNQKVIDKYQELIAKIKQYNNEYYNLDQPSVSDAEYDALYKELLEIEKQNPKIINQDSPS
QIIGGFASSKFSKYTHQKLMLSLDKATHFDEITKFYNDIFKVIKTDNKGFFLEPKVDGLS
ISLHYENGILQRAVTRGDGLVGEDVSENVLQIKEVKHKIAYKKPIEIRGEIYLSKENFNK
LNKKIEDQGLKSFANPRNAASGTLRQLDKNIVRERNLGIVLYELVDPLVHKITSQDQSIS
FINQLGFPTQKNNKLLYELDDILNYIEEFGEIKNNLDYDCDGLVIKYNDIEQWKLLGFTS
KFPKYAIAYKYQVEEAITRINKISISTGRTGKINYLAHVEPVELNQSIVSKATLHNYNYI
EELNLNIGDDVVIIKAGEIIPKVRELKQKKSIGVFPKLINCLSCKSKLEYIDDNLEQYCL
NKNCQEKIINSLIYFASKPCLDIKGMGDKVVKILYENGLVLEIKDFFELHNKRDKMLQLP
SFKEKKVDNLINAIETIKKAQLHKVIIALGMKNIGTRSSKLISTKINKLSDLLTYNIDEL
ENIDDIGPKSIASIKEFLSEDKNKELITFLDNYFIQVNDSSIGNKLVNLSFSITGTLLKP
RDYFVDLIEKNGGQFHKLPTSKTNYLIVGENPGSAKINKAKILGTQVITIDEFEKMI
NT seq 1974 nt   +upstreamnt  +downstreamnt
atgaaccaaaaagttatcgataaataccaagaattaattgctaaaattaagcaatataat
aatgaatattacaacttagatcaaccaagtgtttctgatgcagaatacgatgctttgtat
aaggaattacttgaaatagaaaaacaaaaccctaaaataataaatcaagattcaccgagt
caaataattggtggatttgcatcaagcaaattcagcaaatacactcaccaaaagttaatg
ctatccttagataaggctactcattttgacgaaataacaaagttttataatgatattttt
aaagtaatcaaaactgataataaaggtttttttctagaacctaaggttgatggtttatca
atatcattacattatgaaaatggaattttacaaagagcagtaacacgtggagatgggctg
gttggagaagatgttagtgagaatgttttgcaaataaaagaagtgaaacacaaaattgca
tataaaaaaccaattgaaatccgtggtgaaatttatttatcgaaagaaaatttcaataaa
cttaataaaaaaattgaagatcaaggtttaaaaagttttgctaatccaagaaacgctgct
tcaggaacgttacgccaattagataaaaatatagttagagaaagaaacttaggaattgtt
ttgtatgaattggttgatccgcttgttcataaaataacaagccaagatcaaagcatcagt
tttattaatcagttaggctttcctactcaaaaaaataataaattactttatgaacttgat
gacatattaaactatattgaagaatttggagaaatcaaaaacaatttagattatgattgt
gatggtttagttataaaatataacgatatagagcaatggaaactacttggttttacctca
aaatttcctaaatatgccattgcgtataaatatcaagttgaagaggcaattacaagaatt
aataaaataagcatttctacaggaagaacaggaaaaataaactacctagcccatgtagaa
ccagttgaattaaatcaaagtatagtaagtaaagcaactttgcataattacaattatatt
gaagagttaaacttaaatatcggtgatgatgttgttattattaaagcgggtgaaataatt
cctaaggttagagaattaaaacaaaaaaaatcaattggtgtttttccgaaacttataaat
tgtttgtcatgtaaaagtaaactggaatacattgatgataatttagaacaatattgcctt
aacaaaaattgtcaagagaaaattattaattcacttatttattttgcttcaaaaccttgt
ttagatataaaaggaatgggtgataaagttgttaaaatattgtatgaaaatggtttggtt
ttagaaattaaagacttctttgagttgcacaataaaagagataaaatgttgcaacttcct
agctttaaagaaaagaaagttgataatcttataaacgctattgaaacaattaaaaaagca
caattacacaaggtaattatagctctaggaatgaagaatatcgggacaagatcttcaaaa
ttaatatcaacaaaaataaataaactaagtgatttattaacctataatatagatgaatta
gaaaatatagatgatattggtcctaagtcaattgcttcaataaaagaatttttaagtgaa
gataaaaataaagaattaattactttcctagataactattttatccaagtaaacgattct
tctattgggaataaattggtaaatttaagtttttcgattacaggtacattactaaaacca
agagactattttgttgatttaattgagaagaatggtggtcaatttcataagttgcctact
tctaaaacaaattacttaatcgttggtgaaaatcccggatccgcaaaaataaacaaagca
aaaattttaggaacacaagtaataactattgatgaattcgaaaaaatgatttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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