KEGG   Momordica charantia (bitter melon): 111006232
Entry
111006232         CDS       T05045                                 
Name
(RefSeq) regulator of nonsense transcripts UPF2
  KO
K14327  regulator of nonsense transcripts 2
Organism
mcha  Momordica charantia (bitter melon)
Pathway
mcha03013  Nucleocytoplasmic transport
mcha03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    111006232
   03015 mRNA surveillance pathway
    111006232
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcha03019]
    111006232
Messenger RNA biogenesis [BR:mcha03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     111006232
   mRNA cycle factors
    P-body specific factors
     111006232
SSDB
Motif
Pfam: MIF4G Upf2
Other DBs
NCBI-GeneID: 111006232
NCBI-ProteinID: XP_022133716
UniProt: A0A6J1BVY0
Position
Unknown
AA seq 1192 aa
MDHHEDDGRLGGESQPKRDDEETVARQEEIKKSFEAKIALRQSNLNPERPDSGFLRTLDS
SIKRNTTIIKKLKQINEEQREGLMDELRNVNMSKFVSEAVAAICDAKLRASDIQAAVQIC
SLLHQRYKDFSPCLIQGLLKVFFPGKSGDELDADRNLKAMKKRSTLKLLLELFFVGVIED
CAIFNNIIKDLTSIEHLRDRDATLTNLTLLASFARQGRILLGLPPTGQDHEEFFKSLNIT
ADQKKFFRKVFHTYYDAASELLQSEHTSLRQMEHENAKILNAKGELNDENVSSYEKLRKS
YDHLYRNVSSLAEALDMQPPVMPEDGHTTRVSAGEDVSSPAAGKDSSVLEAIWDDEDTRA
FYECLPDLRAFVPAVLLGEAEPKANDQSTKPAENMAESEADQGQQTSLEAVEISTDCSLQ
DGKINEKGKDKEEKDKEKSKDTDKEKGKEKDADRKMENEKEKLKNVEGTNLDALLQRLPG
CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSV
ILLQMLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKISSAGLVFSCLKSCLDDFTHH
NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP
ERSARVSKVRPPLHQYIRKLLFSDLDKSAIENVLRQLRKLPWSECEQYLLKCFMKVHKGK
YGQIHLIASLTSGLSRYHDEFSVAVVDEVLEEIRLGLEVNDYGMQQKRIAHMRFLGELYN
YELVESSVVFDTLYLILVFGHGTSEQDVLDPPEDTFRIRMIITLLQTCGHYFDRGSSKRK
LDRFFIHFQKYILSKGALPLDVEFDLQDLFAELQPNMTRYSSIEEINAAFVELDEHERSV
SSSDKPNTEKHLDAEKTPSRTTSNTTSANGRDTVNGSRENGAAAHEDVADSDSDTGSGTI
EAEGRDDEESDLENHEDGDSEDDEDDEEGGGPASDEDDEVHVRQKVAEVDPREEANFEQE
LRAVMQESMDQRRQEIRGRPTLNMMIPMNLFEGTRDHHGRGVGGESGDEALDEDAGGTKE
VQVKVLVKRGNKQQTKKMFIPRDCALLQSTKQKEAAELEEKQDIKRLILEYNDREEEELN
GLGSQTMNWMQTGGNRVPTRGNNWEGSGGRSGGPRHPHHRYIGGGVHYSRKK
NT seq 3579 nt   +upstreamnt  +downstreamnt
atggaccatcatgaagatgatggccgcctggggggtgaaagtcaacccaagagagatgat
gaggaaactgttgctcgtcaggaagaaattaaaaaatcctttgaggctaaaatagctctt
cgtcaaagtaatttgaatcccgagaggcctgactctggattccttagaactttggattct
agtattaaacgcaacacaacaattattaaaaaattaaagcagataaatgaagaacaacga
gaagggctgatggatgagttgcgaaatgtaaatatgagcaaatttgttagtgaggccgtt
gctgctatttgtgatgctaagcttagagcttctgatattcaagcagctgttcagatctgt
tctcttcttcaccaaaggtacaaagacttctcaccatgcttgattcaaggactcttgaaa
gtattttttcctggaaagtctggggacgagttggatgctgataggaacttgaaggccatg
aagaagcgcagcactctcaaacttcttttggaacttttttttgttggagttatagaagac
tgtgcaattttcaataatattattaaggatcttacgagtattgaacatttgagggatcgt
gatgctactctaacaaatttgacactccttgctagctttgctcggcaagggagaatcctc
ttggggctaccgcctacaggacaagatcatgaagagttttttaagagcctcaatattact
gccgaccaaaagaaattcttcagaaaggtgttccatacatattatgatgctgcgtctgaa
ttgcttcagtctgaacatacgtcacttcgccaaatggagcatgaaaatgcgaagatcttg
aatgcaaaaggggaactcaatgatgaaaatgtctcttcatatgaaaagttgcgaaaatct
tatgaccatttatatcgaaatgtctcatccttagcagaagcacttgatatgcaaccccca
gtgatgccagaggatggccacacaaccagggtctctgcaggagaagatgtttcatcacct
gctgctggaaaagattcttctgtgctcgaagccatatgggatgatgaagacactcgggcc
ttctatgaatgcttaccagatctcagagcctttgttccggcggtactgttgggagaagcg
gagcctaaagcaaatgatcaatctacaaagccggcagaaaatatggctgaatctgaagcc
gaccaaggtcagcagacttccctagaggcagttgagatttctactgactgttcgctacag
gatggcaaaattaatgaaaaagggaaagacaaggaagaaaaagataaagaaaagagtaag
gatacagacaaggagaaggggaaagaaaaagatgcagatagaaagatggaaaatgaaaaa
gagaaacttaaaaatgttgaaggaacaaatttggatgctttgttacagagactccctggt
tgcgtcagccgtgacctgattgatcagttgactgtagagttctgttatttgaattccaag
gctaatcgaaagaagcttgtaagggctttgtttaacgtacctaggacatctctggagttg
ctgccgtactactcacgcatggttgcgacattgtcaacttgtatgaaggatgtatctgtc
attctcctccagatgttagaggaggagttcaattttttattgaacaaaaaggaccaaatg
aacattgaaacgaagattagaaatattaggtttattggagagctctgcaagttcaaaatt
tcttcagctggccttgtttttagctgtttgaagtcgtgtttagatgatttcactcaccac
aacattgatgtcgcttgtaatcttcttgagacttgtggacgttttctttatcgatctcct
gaaactacagtgcggatggctaacatgttggagatattgatgcgtttgaaaaatgtaaaa
aatttggatccccgacatagcaccctggtagaaaatgcatactatctttgcaagccacca
gagagatctgcacgagtgtcaaaagttcgtccaccattgcatcagtatattagaaagttg
ctcttctcagatctagacaagtctgccattgagaacgtgttgaggcaacttcggaaactt
ccatggagtgaatgtgaacaataccttttaaaatgttttatgaaagttcacaaagggaag
tatggccagattcacttgattgcttctctcacatctggtttgagtcgatatcatgatgaa
ttctcggttgctgttgttgacgaggtcttggaagaaattaggcttggacttgaagtaaat
gattatgggatgcaacaaaaacgcattgcgcatatgcggtttttgggggagttgtacaac
tatgaacttgtagagtcatctgttgtttttgatacgctctatttgattcttgtctttggc
catggcacatcagagcaagatgtactggatccacccgaggacactttccgcatacggatg
attatcactcttcttcaaacctgtggtcactactttgatcgaggatcttcaaagaggaaa
cttgatcggttttttatacacttccagaaatatattctcagcaaaggcgcacttccattg
gatgttgagttcgacttacaggatttatttgcggaattgcaaccaaacatgactagatac
tcatccattgaagaaataaatgctgcttttgtagaacttgacgagcatgagcgttctgtc
tcatcaagtgataagcccaataccgagaaacaccttgatgctgaaaaaactcccagcaga
actacttccaataccacctcagctaacggaagggacacggtcaatggctctagggaaaat
ggtgcagcagctcatgaagacgttgccgatagtgacagtgatacaggaagtggcactatt
gaggcagagggacgtgatgatgaagagtcggacttggagaatcatgaagatggtgacagc
gaggatgatgaagacgacgaagaagggggtgggcctgcttcggatgaggatgatgaggtt
catgttagacagaaagtggctgaggtagacccccgagaagaagccaacttcgagcaggag
ctgagggctgtaatgcaggagagtatggatcagcgcaggcaagagatacgtggccgaccg
acattgaatatgatgataccgatgaatttgtttgagggaacgagggaccaccatggaagg
ggggtagggggagagagtggggatgaggcattggacgaggatgctggtggaaccaaagag
gttcaggtgaaagttctcgtgaagcgtgggaacaagcagcaaacgaagaagatgttcatc
cctcgtgattgcgcacttttacagagcacaaaacagaaggaagcagcagagctagaagag
aagcaagatattaagaggttaatcttagagtacaatgaccgggaagaggaagagcttaat
ggcttaggctctcaaacaatgaattggatgcagacagggggtaatagagtccctactcgg
gggaacaattgggaggggtctggtgggaggagtggtgggccacgtcatccacatcatcgg
tatattggcggtggcgttcattacagtagaaaaaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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