KEGG   Mobiluncus curtisii: HMPREF0573_10454
Entry
HMPREF0573_10454  CDS       T01257                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
mcu  Mobiluncus curtisii
Pathway
mcu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mcu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HMPREF0573_10454 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mcu03400]
    HMPREF0573_10454 (mfd)
Enzymes [BR:mcu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HMPREF0573_10454 (mfd)
DNA repair and recombination proteins [BR:mcu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      HMPREF0573_10454 (mfd)
SSDB
Motif
Pfam: DEAD TRCF UvrB_inter Helicase_C CarD_TRCF_RID ResIII MFD_D3 UB2H RecG_dom3_C AAA_22 TfuA
Other DBs
NCBI-ProteinID: ADI66773
UniProt: D6ZJ74
Position
complement(520681..524178)
AA seq 1165 aa
MSLHGLLEVTGDALAGLEPDRADTASEYVAPPGFYAPLIAGLPGSDERLTVVLAPSTRAA
TQLARELGAYTAGVELFPDWETLPHERLSPRTDTMARRIWALHRVTHPHPQDAVQFLVMP
VRAALAPVNAHIADYPLFTVQVGDTYDRDTMAANLLRLGYERVDMVGARGQFAVRGGLLD
VFSPTSAHPVRIELFGDEVDTIRAFTASDQRTFGGDIRTLVAPACRELLLDDTARKLAAS
LAGQMPQAAEILNLAAEGKYGEGLESLSPLLGAEMVPLFSLLPPGARLVATDRPRLEARA
TELVETTQEFLAASWSAAAGGGEVPLEIEQASFLTLEQLHAAAQEAHMDTVFVSPFAVGE
NAQNVGAQIVMEPLAGETGLIGTIGDLASKNWNVVITTTGKGMASRLRDVLSEADVPAKV
VKDATSQNDGTVQITVAPLDEGYQVPTAQLLVVSEAQVLGKKKSRHTADKANLPARRRKA
IDPLTLTQGDYVVHLHHGIGRFVKLAKRTMGRGRETTSKEYVVLEYAPSKRNGPADQLWV
PTDSLDLLSKYVGGESPTLSKMGGADWAKTKSKARKAVKEIARELVRLYAIRQASKGHAF
SPDTPWQRELEDSFEFVETPDQLTVIDEVKHDMEQTVPMDRLVCGDVGYGKTEIAVRAAF
KAVQDGKQVAILAPTTLLVSQHTETFTSRFAGFPVTVAALSRFTTAKEAAQIKAGLKDGS
IEVVIGTHALLSGNVRFKDLGLVVIDEEQRFGVEHKEALKALRADVDVLTMSATPIPRTL
EMAITGIRGMSTLTTPPEDRHPVLTYVGAYSDKQVAAAIRRELLRDGQVFFVHNRVQSIN
RIAAHLAELVPEARVRVGHGQMSEKQLESVMVDFWNQEFDVLVSTTIVENGLDVTNANTI
IVDRADRFGLSQLHQLRGRVGRGRERGYAYFLYPPGTTMNETAFERLKTIGTNTGLGSGM
AIATKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVATYKGEEAPEDTSVSIELPI
DAFIPEDYLDVQSLRLDAYTRLSAATTDEEIDQLLEEMTDRYGRPPEPLERLGAVAKLRN
LARAQKVQEIKVMGKFIRFAPVELADSQMARLQRMYPGARVKLATRELFIPAPTRKNGLS
ETPIVDLELLEWVQKIIRGIIKPLA
NT seq 3498 nt   +upstreamnt  +downstreamnt
atgagtttgcacggtttactggaggtgactggggatgctttggcaggtctggagcctgac
agggcggatacggcgagcgaatacgtagccccacccggcttttatgccccgctcatcgcg
ggcttgcccggcagcgacgaaaggctgaccgtggtcctcgcgccgagcacccgtgccgcc
acccaattggctcgtgaattgggagcctataccgctggagtggagttgtttcctgactgg
gaaaccttgcctcacgagagactttctccccgcaccgacacgatggcgcgccggatttgg
gctttacaccgggtgacgcatcctcatccgcaagacgcggttcagttcctggtcatgccc
gtgcgagccgcgctagccccggtaaatgcgcatatagctgactatcccctgtttaccgtg
caggtgggagacacctatgaccgcgacaccatggccgcaaatttgttgcgtttgggctac
gaacgcgttgatatggtcggagcgcgcggtcagtttgcggtgcgtggagggctgcttgat
gttttttctcccacctctgcccacccggtgcgtatcgaactgtttggtgatgaggtagac
accatccgcgcgtttacggcatcggatcagcggactttcggcggcgacatccgaacgctg
gtcgcccccgcttgtcgcgaactgctcctcgacgatacggcacgaaaactggctgccagc
cttgctggtcagatgccgcaggctgccgaaatactcaacctggcagccgagggcaaatac
ggcgaaggcttggaatccttgagtcccctgctgggtgcagaaatggtgccgctgttttct
ctgctgccacccggtgcccgactggtggcgaccgatcgtccccggttggaagctcgtgct
acagaactggtagaaactacccaagagttcctggcagcttcctggtcggcggccgcgggt
ggcggggaagtgcccctggagattgaacaagcttcatttttgaccttggagcagcttcat
gctgcggcacaagaggcgcacatggacacggtgttcgtctctccttttgcggtgggcgag
aacgctcaaaacgtgggggcgcaaatcgtgatggagcctctcgccggagaaactggactg
attggtacaatcggcgatttagcttcgaaaaactggaatgtagtgattactacgaccggc
aagggaatggcgagccggctgcgggatgtgctcagcgaggctgatgtcccggcgaaagtg
gtgaaggacgcaacatcgcagaacgacggaaccgtacagattacggtggcgcccctggac
gaaggataccaagtccccaccgcgcagctgttggtggtgagcgaggcacaggtcttggga
aaaaagaaatcccgccacactgccgacaaggcaaaccttcccgccagacgacgcaaagct
attgaccccctgacgttgacccagggcgactacgtggttcacctgcaccacggcatcgga
cgcttcgtgaaactggcgaagcgcaccatggggcgaggccgggaaaccacctcgaaagaa
tacgtggtgttggaatatgcccccagcaaacgcaacggacccgctgaccagctgtgggtg
cctactgactccctggatttgctctcaaaatatgtgggtggagaatctccaaccctgtca
aagatgggcggagcagattgggcaaagaccaagtccaaagcccgcaaagcggtcaaagaa
atcgctcgtgagctggtgcgactgtacgccatccggcaagcctccaaaggacatgctttc
agcccggataccccctggcagcgggaactggaagatagtttcgagttcgtcgaaactccc
gaccagctcacggtcattgatgaagtcaagcacgatatggaacaaaccgtcccgatggat
cggctggtctgtggtgatgtaggttacggaaaaactgagattgcggtccgtgcggcgttt
aaagcggtccaagatggcaagcaagtggcgattttagcgccgaccaccctgctggtcagc
cagcacaccgaaacatttacgagccgttttgcgggattcccggtgacggtggcggcgctg
tctcgctttactacggcgaaagaagctgcccagattaaagccgggttaaaagacggctcc
atcgaagtggtcatcggcacccacgccctgctgtccggaaacgttcgtttcaaagacttg
ggtctggtggtaatcgacgaagagcaacgtttcggggtggagcacaaggaagccctaaag
gctttgcgtgccgacgttgacgtcttgacgatgagcgccaccccgattccgcgcaccctg
gagatggcaatcaccgggattcgcggcatgagcaccctcaccaccccgccggaggaccgc
cacccggtcttgacctacgtgggagcctactcagataaacaggttgcggcagcaatccgg
cgcgagcttttgcgtgatggtcaagtatttttcgtgcataaccgggtgcaatcaatcaat
aggattgccgctcacctggccgagctggtgcccgaagcgcgggtgcgagtggggcacggg
caaatgtcagaaaaacagctggaatcggtcatggtggatttctggaaccaagaattcgat
gtgttggtgtccacgacgattgtcgaaaacggcttggatgtgaccaacgccaacacaatc
atcgtggatcgtgccgatcggtttggcctctcgcagctgcatcagctccgcggacgagtc
ggccgcgggcgggaacgtggctacgcttacttcctctatccgccgggcaccaccatgaat
gaaacagcttttgagaggctgaaaacgattggaaccaacaccgggttaggctccgggatg
gctatcgctacgaaagacctggagatccgaggtgctggcaacttattgggcggtgagcag
tctggacacatcgccggggtgggctttgacctctatgtgcgcatggtgggtgaggcagtt
gcgacctataaaggcgaggaagcccccgaagacaccagtgtgtccattgagctgcccata
gatgcctttattcccgaggactatctggatgtgcagtcgctgcgtctcgatgcctataca
cgtctgtccgcagcgactaccgatgaggaaatcgatcaactgttggaggaaatgaccgac
cgctacgggcgacctccggaaccgttggaacgcttgggggcagtagcaaaactgcgtaac
ttggcgcgggctcaaaaagtgcaagagattaaagtcatgggcaaatttattcgctttgcg
cccgtcgaactggcggattcgcagatggctcggctgcagcgcatgtatccgggagcgcgg
gtaaaattggcgacgcgtgaattgttcatacctgcaccgactcggaaaaatgggttgagc
gagactcccatcgtggatttagagctgctggaatgggtccaaaaaatcattcggggcatt
attaaaccgctagcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (37)   

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