KEGG   Methylomonas sp. DH-1: AYM39_19945
Entry
AYM39_19945       CDS       T04396                                 
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase
  KO
K01925  UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
Organism
mdh  Methylomonas sp. DH-1
Pathway
mdh00470  D-Amino acid metabolism
mdh00550  Peptidoglycan biosynthesis
mdh01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:mdh00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    AYM39_19945 (murD)
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    AYM39_19945 (murD)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:mdh01011]
    AYM39_19945 (murD)
Enzymes [BR:mdh01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.9  UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
     AYM39_19945 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:mdh01011]
 Precursor biosynthesis
  Amino acid ligase
   AYM39_19945 (murD)
SSDB
Motif
Pfam: Mur_ligase_M MurD-like_N Mur_ligase_C TrkA_N XdhC_C 2-Hacid_dh_C NAD_binding_8 ThiF CbiA
Other DBs
NCBI-ProteinID: ANE57224
UniProt: A0A172UDP7
Position
4490642..4492012
AA seq 456 aa
MDTAQLLANLEHHFQLDPANARLLIVGLGATGYSAAQFLQKTPIKFAVVDSRKQPPLIDN
LREQMPDVPVFSGGFDQAALDVATHLLVSPGVSLHETAIHKAVQAGVVVISDIDLFACAT
DKPIIGITGSNGKSTVTTMLGEMANAAGVKTAIGGNLGTPALDLLQQDADLYVLELSSFQ
LERTRALNAKAATVLNVSPDHLDRHASIESYAAEKQRIFRGGGTMVLNADDALVMAMRDA
NRPTLTFSIQGPADFYLQRGETVNLMHGNQVLMPAAHLRLEGSHNLANALAALALGSAVG
LSMTAMCSALRNFKGLPHRMQKVAERAGINWINDSKATNIGACVAALQGYDRKVVLIAGG
DAKGADMAELAPAVREKTKGVVLIGKDAQVIADALQDCVPVRFAGTMKEAVKTAASLADA
GDSVLLSPACASLDQYRSYVDRGNKFAEAVMELPSC
NT seq 1371 nt   +upstreamnt  +downstreamnt
atggataccgcgcaactactcgccaatctcgaacaccatttccaactggatccggccaat
gcccggctgctgatcgtcggcctgggcgcgaccggttactcggccgcgcaatttttgcaa
aaaaccccgatcaaattcgccgtggtcgacagccgcaagcagccgccattgatcgacaac
ctgcgcgaacaaatgccggatgtaccggtattttccggcggcttcgaccaagccgcgctg
gatgtcgccacccacttgctggtcagccccggcgtatccttgcacgaaaccgcgatccat
aaagccgtgcaggccggagtcgtcgtgatcagcgacatcgatttattcgcctgcgccacc
gacaaaccgatcatcggcatcaccggttcgaacggcaaaagcaccgtcacgacgatgctg
ggcgaaatggccaatgccgccggggtgaaaaccgccatcggcggcaatctgggtacgcca
gcgctggacctgttgcaacaggatgccgatttatacgtgctggaactgtctagtttccaa
ttggagcgcacccgagctttgaacgccaaagccgcaaccgtgttgaacgtcagtccagac
catctggatcgccacgccagcatcgaaagctacgccgccgaaaaacagcgcatattccgc
ggcggcggcaccatggttttaaacgccgacgatgcgctggtgatggcgatgcgcgacgct
aatcgaccgacgttgacgttttcgatccaaggtcccgccgatttttatctacaacgcggc
gaaaccgtcaatctgatgcacggcaaccaagtcttgatgccggccgcccacctgcgcctg
gaaggttcgcacaatttggccaacgccctggctgccctggccttgggcagcgcggtcggt
ctgagcatgaccgcgatgtgctcggcgctgcgcaatttcaaaggcctgccgcaccggatg
cagaaagtcgccgaaagggccggcatcaactggatcaacgattccaaggccaccaacatc
ggcgcctgcgtcgctgcgttgcaaggctacgaccgtaaagtggtgctgatcgccggcggc
gacgccaaaggtgccgacatggccgaattggcgccggcagtgcgggaaaaaaccaaaggt
gtcgttctgatcggcaaggatgcgcaagtgattgccgatgcgctgcaggattgcgtgccg
gtcagattcgccggcaccatgaaagaagcggtcaaaaccgccgcaagcctggccgatgcc
ggcgacagcgtgctgttgtcgccggcctgcgcgagcttggaccaataccgcagttacgtc
gaccgcggcaacaaattcgccgaagcggtgatggagctgccgtcatgttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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