KEGG T00947: METDI0009

Methylobacterium extorquens DM4: METDI0009

Entry

METDI0009 CDS T00947

Gene name

recD

Definition

Helicase (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

mdi Methylobacterium extorquens DM4

Pathway

mdi03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:mdi03440]

SSDB

Motif

Pfam:

AAA_30 HHH_4 UvrD_C_2 AAA_19 HHH_5 AAA_11 Viral_helicase1 Helicase_RecD HHH_2 AAA_16 AAA_29 AAA_28 PIF1 AAA_22 IstB_IS21 NTPase_1 ArgK AAA_10 MobB AAA_23 HHH AAA T2SE DUF258 DUF3558 TrwB_AAD_bind DEAD

Other DBs

NCBI-GI:

254558662

NCBI-GeneID:

8190541

UniProt:

C7C6G5

Position

8968..11169

AA seq 733 aa
MNTSVRPGDLDGSTPLDMLAGSVERVTFHSAETGFCVLKVHARGRRDLVPVVGHAPAIAA
GEWLTASGRWVTDREHGLQFRADTLQVTPPTGIEGIERYLASGQMRGIGPMMAKRIVARF
GEAVFEIIEAEPARLTEVEGIGRKRAARIVKGWAEQKAVREIMIFLHAHGVGTARATRIF
RTYGGDSLKVMAEDPYRLARDIRGIGFRTADAIALRLGLARDAPQRLAAGVSYALQTAMD
EGHCGLPVERLVRLAAELLDVAPDLIRLAAALVLREGREVVADTLRGEPCLFLKGLHGAE
RVIAMQLAERAAGPPPWAAIDFALARPWVEAKTGKTLSASQAEAVGLVLRSKLCVLTGGP
GVGKTSTLDAILRILTAKGVRVLLAAPTGRAAKRMAEQTGLDARTLHRLLEIDPRNGGFQ
RNEDNPLDCDLLVIDETSMVDVPLMHALLKAVPERAGLILVGDVDQLPSVGPGQVLADVI
ASGTVPVARLTEIFRQAAQSRIVVNAHNINTGRMPAAPAKGEDSDFYLVEIEDADEGVET
LIELVTRRIPRRFGLNPTRDIQVLTPMIRGSLGSRNLNNALQRVLNPSPSAEVERFGWRF
APGDRVMETRNDYDRDVFNGDLGTISAIDAEDEALVVDFDGRAVIYPFNELDTLVPAFAT
TIHKAQGSEYPAVVIPVVTQHRTMLARNLLYTGVTRGRRLVVLIGQRRALAMAVREGASR
RRWTKLREWLDAA

NT seq 2202 nt +upstreamnt +downstreamnt
atgaacacctcagtccgtcccggcgacctcgatggcagtacgcccctcgacatgctcgcc
ggctcggtcgagcgggtgacgttccacagcgccgagaccggcttctgcgtcctcaaggtc
catgcccgcggccggcgcgacctcgtaccggtggtgggtcacgcgcccgccatcgccgcg
ggcgagtggctgaccgcttccgggcgatgggtcaccgaccgtgagcacggcctccagttc
cgcgccgacacgcttcaggtgacaccgccgaccgggatcgagggcatcgagcgctacctc
gcctccgggcagatgcgcggcatcggcccgatgatggccaagcgcatcgtcgcccgcttc
ggggaggcggtgttcgagatcatcgaggccgagcccgcccgcctcaccgaggtcgagggg
atcggccgcaagcgcgccgcgcgcatcgtcaagggctgggccgagcagaaggccgtgcgg
gagatcatgatcttcctgcacgcccacggcgtcggcaccgcacgggcgacccggatcttc
cgcacctatggcggggattccttgaaggtcatggccgaggacccctatcggctcgcccgc
gacatccgcggcatcggcttccgcacggcggacgccattgccctgcgcctcggcctcgcc
cgcgacgcgccgcagcggctcgctgccggtgtctcctacgcgctccagacggcgatggat
gagggccattgcggcctgcccgtcgagcggctggtgcgtctcgccgccgagcttctcgac
gtcgcgcccgatctcatccggctcgccgcggcgctcgtcctgcgcgagggccgggaggtc
gtcgcggatacgctgcgcggcgagccctgcctgttcctcaagggcctgcacggcgccgag
cgcgtcatcgcgatgcagctggccgagcgcgccgccggcccgccaccctgggccgcgatc
gacttcgcgctggccaggccctgggtcgaggcgaagaccggaaagacgctgtccgcctcg
caggccgaggcggtcgggctggtgctccgctcgaagctctgcgttctcaccggcggcccc
ggcgtcggcaagaccagcaccctcgatgcgatcctgcgcatcctcaccgccaagggcgtg
cgggtgctgctcgccgcccccaccggccgcgcggccaagcgcatggccgagcagaccggg
ctggacgcacgcaccctccaccgcctgctggagatcgacccgcgcaacggcggctttcag
cgcaacgaggacaacccgctcgattgcgatctcctcgtcatcgacgagacctcgatggtc
gacgtgccgctgatgcatgcactgctcaaggcggtgccggagcgggcgggcctgatcctc
gtcggcgatgtcgatcagcttccgtcggtcggacccggacaggtgctggccgacgtgatt
gcctccggaaccgtgccggtggcgcgcctcaccgagatttttcgccaagcggcgcagagc
cggatcgtcgtcaatgcccacaacatcaacaccgggcggatgccggccgcgcccgccaag
ggcgaggacagcgacttctacctcgtcgagatcgaggacgcggacgagggcgtggagacg
ctgatcgaactcgtcacccgccgcatcccacgccgcttcggtcttaatcccacccgcgac
atccaagtgctgacgccgatgatccgcggctcgctcggcagccgcaacctcaacaacgcc
cttcagcgcgtcttgaatccgtcgccctcggcggaggtcgaacgcttcggctggcgcttt
gcgcccggcgaccgggtgatggagacccgcaacgactacgaccgcgacgtgttcaacggc
gacctcggcacgatcagcgccatcgatgcggaggacgaagcgctcgtggtcgatttcgac
ggtcgtgcggtgatctaccccttcaacgaactcgacacgctggtgccggccttcgccacg
acgatccacaaggcacagggctcggaatatccggccgtggtgatcccggtggtgacccag
caccgcacgatgctggcgcgcaacctgctctataccggcgtcacccgcgggcgccgcctc
gtcgtgctgatcggccagcgccgggcccttgcgatggcggtccgcgaaggcgcctcgcgg
cggcgctggaccaagctgcgggagtggctggacgccgcctga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (27)   
   Pfam (27)   
All databases (36)   

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