KEGG   Methylorubrum extorquens DM4: METDI5011
Entry
METDI5011         CDS       T00947                                 
Symbol
rpoB
Name
(GenBank) RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
mdi  Methylorubrum extorquens DM4
Pathway
mdi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    METDI5011 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdi03021]
    METDI5011 (rpoB)
   03400 DNA repair and recombination proteins [BR:mdi03400]
    METDI5011 (rpoB)
Enzymes [BR:mdi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     METDI5011 (rpoB)
Transcription machinery [BR:mdi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     METDI5011 (rpoB)
DNA repair and recombination proteins [BR:mdi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      METDI5011 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DOCK-C2
Other DBs
NCBI-ProteinID: CAX26625
UniProt: C7CJC2
Position
4910244..4914374
AA seq 1376 aa
MANTLVGRKRIRKFFGKIREVAEMPNLIEVQKASYDQFLMVDEPEGGRADEGLQSVFKSV
FPISDFASTALLEFVRYTFEQPKYDVDECRQRGITFAAPLKVTLRLIVFDVDPDTGAKSV
KDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RIIPYRGSWLDVEFDAKDIVHVRIDRKRKLPVTSLLFALGLDGEEILSTFYNRVAYQRDG
ADWRVPFDAERLKGFKASVDLIDADSGEVVLEAGKKLNARNARLIGEKGTKFLRAADEDL
IGQYIAEDLVNMKTGEIWAEAGDEISEKLLKSLDDVGVTELPVLDIDHVNVGPYIRNTLA
VDKNSAREGALFDIYRVMRPGEPPTLDTAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLD
AADTVRTLRREDMLAVVKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLGLLRME
RAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIETPFR
RVKDGVVTDEVAYLSAMEEAKYYVAQANAGMDEGRKLTDDLVVCRRAGEVIVVAPDRVDL
MDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMEAVVARDS
GAAIAARRSGIVDQVDATRIVIRASEETDPTKPGVDIYRLQKFQRSNQSTCITQKPLVRV
GEPVKKGEIIADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFTSIHI
EEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHAGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRVPPGVTGTIVEVRVFNRHGVDKDERAQAIEREEI
ERLAKDRDDEQTILDRNTYARLAEVLIGQSPIAGPKGFRKDTTLTREIISEYPRSQWWQF
AVVDDRMMTEIEAMQKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKI
QPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWA
AAGLGRKVSKAVDAYLKNQDIAPLRAEMEAIYSPSELEGLSDEALAEAGNNVRRGVPMAT
PVFNGAKEADIETMLEMAGLDRSAQSTLYDGRTGEPFDRKVTMGYIYMLKLHHLVDDKIH
ARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKV
YEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELTSSKQQQAANDQIEPPADAAE
NT seq 4131 nt   +upstreamnt  +downstreamnt
atggccaatacgctggtcggtcgcaagcgcattcgcaagttcttcggtaagatccgggaa
gtcgccgagatgccgaacctcatcgaggttcaaaaggcgtcctacgaccagttcctgatg
gtggacgagcccgagggcgggcgtgccgacgagggcctgcagagcgtcttcaagtcggtc
ttcccgatctccgacttcgcctcgacggcgctgctcgagttcgtgcggtacaccttcgaa
cagccgaaatacgacgtcgacgagtgccgccagcgcggcatcaccttcgcggccccgctc
aaggtgacgctgcggctcatcgtgttcgatgtggaccccgataccggcgccaagtcggtc
aaggacatcaaggagcaggatgtctacatgggcgacatgccgctcatgacggacaacggc
accttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagatgcaccgctcgccgggc
gtgttcttcgaccacgacaagggcaagacccactcgtccggcaagctgctgttcgccgcc
cgcatcatcccctaccggggctcctggctcgacgtcgagttcgacgccaaggacatcgtg
cacgtccgcatcgaccgtaagcgcaagctgccggtcacctcgctgctgttcgcgctcggc
ctcgacggcgaagagatcctctcgaccttctacaaccgcgtcgcctaccagcgtgacggg
gcggattggcgcgtgccgttcgacgccgagcgcctcaagggcttcaaggcctcggtcgat
ctcatcgacgccgattccggcgaggtcgtgctggaggcgggcaagaagctcaacgcccgc
aacgcgcgtctgatcggcgagaagggcaccaagttcctgcgcgccgcggacgaggatctg
atcggccagtacatcgccgaagacctcgttaacatgaagacgggcgagatctgggccgag
gccggcgacgagatctccgagaagctcctcaagagcctcgacgacgtcggcgtcaccgag
ctgcccgtgctcgacatcgaccacgtcaatgtcggcccctacatccgcaacacgctggcg
gtggacaagaactccgcccgcgaaggcgcgctgttcgacatctaccgcgtcatgcgtccc
ggcgagccgccgacgctcgacaccgccgaggcgatgttccactcgctgttcttcgattcc
gagcgctacgacctctcggcggtcggccgcgtgaagatgaacatgcgcctcgacctcgac
gccgccgacaccgtgcggacgctgcgccgcgaggacatgctggcggtcgtcaaggcgctg
gtcgacctgcgcgacggcaagggcgagatcgacgacatcgaccacctcggcaaccgccgt
gtccgctcggtcggcgagctgatggagaaccagtaccgtctgggcctcctgcggatggag
cgcgccatcaaggagcgcatgtcctcggtcgatatcgacacggtgatgccgcaggatctc
atcaacgcgaagcccgccgcggcggcggtgcgcgagttcttcggctcgtcgcagctctcg
cagttcatggaccagaccaacccgctgtcggaagtgacgcacaagcgccgcctctcggcg
cttggcccgggcggtctgacccgcgagcgcgccggcttcgaggtgcgcgacgtgcacccg
acccattacggccgcatctgcccgatcgagaccccggaaggcccgaatatcggcctgatc
aactcgctggcgaccttcgcccgcgtgaacaagtacggcttcatcgagacgccgttccgc
cgggtgaaggacggcgtggtgaccgacgaggtcgcctacctctccgccatggaagaggcg
aagtactacgtcgcccaggccaacgccggcatggacgagggccgcaagctgacggacgac
ctcgtggtctgccgccgcgcgggtgaggtcatcgtggtcgcccccgaccgcgtcgatctc
atggacgtgtcgccgaagcagctcgtctcggtcgccgcggcgctgattccgttcctcgag
aacgacgacgccaaccgcgcgctgatgggctcgaacatgcagcgccaggcggtgccgctg
gttcgtgccgacgcgcccttcgtcggcaccggcatggaggccgtggtcgcccgcgactcc
ggtgccgccatcgccgcccgccgctccggcatcgtcgatcaggtggacgccacccgtatc
gtcatccgcgcctcggaagagaccgacccgaccaagcccggcgtcgacatctaccgcctg
cagaagttccagcgctccaaccagtcgacctgcatcacgcagaagccgctggtgcgcgtc
ggcgagccggtgaagaagggcgagatcatcgccgacggtccctcgaccgagttcggtgag
ctcgcgctcggccgcaacgtgctcgtcgcgttcatgccgtggaacggctacaacttcgag
gactcgatcctgctctccgagcggatcgtgaaggatgacgtgttcacctcgatccacatc
gaggaattcgaggtgatggcccgcgacaccaagctgggtccggaggagatcacccgcgac
atcccgaacgtctcggaagaggcgctcaagaacctcgacgaggccggcatcgtctatatc
ggcgccgaggtgcatgccggcgacatcctcgtcggcaagatcacgccgaagggtgagagc
ccgatgacgccggaggagaagctcctgcgcgccatcttcggcgagaaggcctcggacgtg
cgcgacacctcgctccgggttcccccgggcgtgaccggcacgatcgtcgaggtgcgggtg
ttcaaccgccacggcgtcgataaggacgagcgcgcccaggcgatcgagcgcgaggagatc
gagcgtctcgccaaggaccgcgacgacgagcagaccatcctcgaccgcaacacctatgcc
cgcttggccgaggtgctgatcggtcagtcgccgatcgccggcccgaagggcttccgcaag
gacaccacgctgacccgcgagatcatcagcgagtatccccgctcgcaatggtggcagttt
gccgtcgtcgacgaccgtatgatgacggaaatcgaggcgatgcagaagcagtacgacgag
tcgaagaagcgcctcgagcagcgcttcctcgacaaggtcgagaagctgcagcgcggcgac
gagcttccgcccggcgtcatgaagatggtcaaggtcttcgtggcggtgaagcgcaagatc
cagcccggcgacaagatggccggccgccacggcaacaagggcgtcgtatcgcgcatcgtg
ccgatcgaggacatgccgttcctcgaagacggcacgcatgccgacatcgtgctcaacccg
ctcggcgtgccctcgcgcatgaatgtcggccagatcctggaaacccatctgggctgggcg
gctgcgggcttgggtcgcaaggtctccaaggcggtcgatgcctatctaaagaaccaggac
atcgcgccgctgcgggctgagatggaagcgatctactcgccgtccgaactcgaggggctg
tccgacgaggctctggccgaggcgggcaacaacgtgcgccgcggcgtgccgatggccacc
ccggtgttcaacggcgccaaggaagccgacatcgagacgatgctggagatggccgggctc
gaccgctcggcgcagtcgacgctctacgacgggcggaccggcgagcccttcgaccgcaag
gtcaccatgggctacatctacatgctgaagctgcaccacctcgtggacgacaagatccac
gcgcgctcgatcggcccgtactcgctcgtcacccagcagccgctgggcggtaaggcgcag
ttcggcggtcagcgcttcggtgagatggaggtctgggcgctggaggcctatggcgcggcc
tacacgctgcaggagatgctcacggtgaagtcggacgacgtggccggccgcaccaaggtc
tacgaggcgatcgtccgcggcgacgacacgttcgaggccggcatccccgaatccttcaac
gtgctcgtcaaggagatgcgctcgctcggcctcaacgtcgagctcacctcctccaagcag
cagcaggcggccaacgaccagatcgagccgccggccgacgccgccgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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