KEGG   Malus domestica (apple): 103400361
Entry
103400361         CDS       T03194                                 
Name
(RefSeq) polyadenylate-binding protein 3
  KO
K13126  polyadenylate-binding protein
Organism
mdm  Malus domestica (apple)
Pathway
mdm03015  mRNA surveillance pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103400361
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103400361
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103400361
   03041 Spliceosome [BR:mdm03041]
    103400361
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     103400361
   mRNA cycle factors
    Stress granule specific factors
     103400361
Spliceosome [BR:mdm03041]
 Complex C
  Other components
   Complex C specific factors
    103400361
SSDB
Motif
Pfam: RRM_1 PABP RRM_occluded RRM_5 RRM_3 Nup35_RRM RRM_7 DUF848
Other DBs
NCBI-GeneID: 103400361
NCBI-ProteinID: XP_008337230
Position
10:4225523..4229577
AA seq 646 aa
MAAAVSGPVAQPVSPAAQQAPPVAAPSVFGNVSLYVGDLDPSVNEAQLYDLFNQMGQIVS
IRVCRDQSRMQSLGYAYVNYGDPQHAANALEVLNFTPINGKPIRIMYSHRDPSIRKSGKA
NVFIKNLDKSIDHKALLDTFSTFGNVLSCKVALDGNGQSKGYGFVQYDNEESAQEAIKKL
NKMLINGKLVYVGLFQRGQERNGQNGSPHFTNVYVKNLSETTTDEDLKKTFGEHGNITSA
VVMRDGSGKSRCFGFVNFEKPEEAAAAIEKLNGSTVSGDKVLFVGRAQRKSEREAELRAK
FEQERLSRFEKLQGANLYLKNLDDTVNDEKLKELFSEFGTITSCKVMLDHQGVSKGSGFV
AFSTPEEANKALAEMSGKMIGRKPLYVAVAQRKEERKARLQARFAQIRAPGGMSPLPSGI
PAYHPGAPRLAPQQLYFGQGSGILPHQPAGYGFQQQLVPGMRPGNFIMPYHLQRQGQPGQ
RMGVRRSGNFQHVQQQQLLHRNSNQGLRYMGNARNGVDPSLAPQGLVGPMMPLPLDGAGL
PVSPNDIHRSGPLPTSTLASALASATPENQRLMLGEQLYPLVERIEPEHTAKVTGMLLEM
DQTEVLHLIESPDALKNKVAEAMDVLRTAATKSDVTDQLGALDLNE
NT seq 1941 nt   +upstreamnt  +downstreamnt
atggcggcggcggtatcgggtccggtggctcaaccagtgtctccggcggctcaacaggcg
ccgccggttgcggctccgtcggttttcgggaacgtgtcgctgtacgtgggcgatctggac
ccgagtgtgaacgaagcgcagctgtacgatctgttcaaccaaatggggcagatcgtttcg
attcgggtctgtcgggatcagagccgaatgcaatccctcggctatgcctacgttaattac
ggcgatcctcagcacgctgctaatgccctggaggttttgaattttactccgatcaatggg
aaacccatcaggattatgtactctcatcgtgatccaagcattcggaagagcggaaaggcc
aatgtgttcattaagaacctggacaaaagtattgatcataaggcgttgttggacactttt
tcaacctttggcaacgtactttcttgcaaggttgcacttgatggcaacggtcaatcgaaa
gggtatgggttcgtacagtatgacaatgaggaatctgcgcaggaggcgatcaagaagctg
aacaaaatgctgataaatggaaaactggtttatgttggactgtttcaacgaggccaggaa
aggaatgggcaaaatggatcaccacatttcactaatgtttatgtgaagaatttgtcagag
acgacgacagatgaagaccttaagaaaacttttggtgagcatggtaacattaccagtgcg
gttgttatgagggatggttctggaaagtcaagatgttttggttttgttaactttgagaag
ccagaagaagctgctgctgcaattgagaagttgaatgggagcaccgttagtggtgacaag
gttttgtttgtcgggagggctcaaaggaaatctgagagggaggcggagttgagagctaag
tttgaacaggaaaggctcagtagatttgagaagctacaaggtgctaatttatatctcaaa
aatcttgatgacacagtaaatgatgaaaaactaaaggagctattttctgaatttggaaca
ataacatcgtgcaaggtcatgcttgatcaccaaggggtgagcaagggttctggatttgtt
gcattttctactccggaagaagccaataaagccttggccgagatgagtggcaagatgatt
ggacggaagcctttgtatgttgccgtggcccaacgcaaagaagagcgcaaggctcgatta
caggcacgttttgcccaaatccgagcaccaggtgggatgtcaccattgccatcgggaatt
cctgcatatcatcctggggcacctagacttgccccgcaacaactgtattttggtcaaggt
tctggcattctaccccatcagcctgctggttatggcttccagcagcagctagtgcctggc
atgcgcccgggtaacttcattatgccataccaccttcagaggcaaggtcaacctgggcag
cggatgggtgtacggcgaagtgggaacttccaacatgtgcagcagcagcagttactgcac
cgtaattccaatcaaggcttgagatacatgggcaatgcacggaatggagtggacccatct
ttggctcctcaaggtcttgtgggtccaatgatgcctttgccacttgacggtgcagggctg
cctgtgtctcctaatgatatccatcgttctgggccgttgccaacgtcaacacttgcttca
gctttagcttctgctaccccagagaatcagcgtttgatgctgggtgaacaactatatcca
cttgttgagcggattgagcctgaacacacggctaaggtgacagggatgttgctagagatg
gaccagacggaagttctccatctgatcgagtctccagatgccttgaagaacaaggtagct
gaggcaatggatgttctgcgtacagctgcaacgaagtctgacgttactgatcagcttggt
gcattggatctgaatgagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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