KEGG   Malus domestica (apple): 103438299
Entry
103438299         CDS       T03194                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
mdm  Malus domestica (apple)
Pathway
mdm03020  RNA polymerase
mdm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103438299
  09124 Replication and repair
   03420 Nucleotide excision repair
    103438299
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdm03021]
    103438299
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103438299
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103438299
Transcription machinery [BR:mdm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     103438299
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103438299
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      103438299
SSDB
Motif
Pfam: SHS2_Rpb7-N S1 Sod_Cu Vg_Tdu
Other DBs
NCBI-GeneID: 103438299
NCBI-ProteinID: XP_008375064
Position
6:37078291..37080307
AA seq 176 aa
MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGQHGFVVAITGIENIGKGMIR
DGTGFVSFPMKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
TGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPTTA
NT seq 531 nt   +upstreamnt  +downstreamnt
atgttcttccatatagtgttggagaggaacatgcagctccatcctcgccactttggccgc
aatctccgtgaaaatctcgtttccaagctcatgaaagatgtcgaaggcacttgcagtggc
caacatggatttgtggttgcaattacgggcatagaaaacattgggaaagggatgattcgt
gacgggacaggcttcgtctcattccccatgaagtaccagtgtgttgttttcagaccattc
aaaggagagatcttagaagctgttgttaccatggtaaacaagatgggattctttgctgag
gctggtcctgttcaaatctttgtttcgaaccatttgataccggatgacatggagttccag
actggggatatgccaaactatacaacatcagatggatcagttaagattcagaaagacagc
gaagtgcgattaaagataattggaacccgagtagacgctactgaaattttctgcattggc
accataaaggacgatttcttgggtgtgataaacgatcctacgactgcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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