KEGG   Malus domestica (apple): 103444264
Entry
103444264         CDS       T03194                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 24-like
  KO
K12835  ATP-dependent RNA helicase DDX42 [EC:5.6.2.7]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103444264
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mdm03041]
    103444264
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     103444264
Spliceosome [BR:mdm03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    103444264
 Complex B
    103444264
 Complex C
   U2 SnRNP specific factors
    103444264
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 103444264
NCBI-ProteinID: XP_028964499
Position
9:36181687..36186849
AA seq 781 aa
MSKRKFGFEGFGINKQSSFDFERSQQAPQRLYVPPSSRGGNSHDNFEDTDLDNIDYDDND
GSNDPGNDNSHGDGGGGDEEVDPLDAFMEGIHEEVRSAPPPKPKEKAEKYKDDEEEDHME
SFLRAKKDVMLTLASDALHAGYDSDEEVYAAAKAVDAGLLEYDSDDNPIVLDKRKIEPIP
ALDHSSIDYEPFNKDFYEEKESISGMSEEDVFEYKKSLAIRASGFDVPRPVKTFEDSGFS
SQLMTAIKKQDYVKPTPIQCQALPIVXSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL
QKEEGPIGVICAPTRELAHQIYLESKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVV
ATPGRLIDMLKMKALTMIRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM
PRKVEKLAREILSDPIRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDEGDV
LVFASKKAAVDEIESQLAQKGFKVTALHGDKDQASRMDILQKFKSGIYHVLVATDVAARG
LDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGELVNSLVAA
GQIVSTELMDLAMKDGRFRSKRDSRKGGGKKGRGRGGGGGGGRGVRGVDFGLGIGYNTES
NNSSSHTVASRPATVTPVRTGMMSQFKTKFVAASSNSPSQASGNSYSAPSRPALRGFVSG
GSIGGDVYRTQATSTITPALTPAPTPAPTSSQNSGVNANQKPSESSRDKPRERRRRSGWD
C
NT seq 2346 nt   +upstreamnt  +downstreamnt
atgtcgaagagaaaattcggattcgaaggctttggcataaacaagcaatcaagcttcgat
ttcgagcggtcacagcaagcccctcagcggctctacgtccctccgtcgtctcgcggcgga
aacagccacgacaacttcgaagacaccgacctcgacaacatcgattacgacgacaacgat
ggttccaatgaccccgggaatgacaacagccacggcgacggtggcggcggtgacgaggaa
gtagatcctctggatgctttcatggaggggattcacgaggaggtgaggtcagctccgccg
ccgaagccgaaagagaaagccgagaagtacaaggacgatgaggaggaggatcacatggag
agttttctgagggctaagaaggacgtgatgctcacgctggcatcggatgctttacacgcc
ggatatgactccgacgaggaggtatatgcggccgccaaggccgtcgatgccgggttgttg
gagtacgattcggatgataatcccattgttcttgacaagaggaagatcgagccaattcca
gctctcgatcatagttcaatcgactacgagccttttaataaggatttttacgaggagaaa
gagtcgatttcagggatgagtgaggaggatgtttttgagtacaagaagagcttggccatc
cgtgcgtcgggttttgatgtgccaaggccggtcaagacatttgaagactctggattttct
tcacagctgatgactgccataaaaaaacaagactatgtaaagccgacaccgatacagtgc
caagctctacccatagttncttccgggagagatatcattggtattgcgaaaactggttct
ggaaagactgctgcttttgtccttccaatgattgtccacattatggatcagccagaactt
caaaaagaagagggtcctattggagtgatatgtgcacctactcgagagctggcgcaccaa
atatacttagagtccaagaaatttgctaaatcacatgggatacgtgtctctgctgtatat
ggtggaatgtctaagcttgatcagttcaaagaacttaaggcaggatgtgaaatagttgtt
gctactcccgggagattaatagacatgcttaaaatgaaggcactgacaatgataagggca
acttacctagtacttgatgaggctgatcggatgtttgaccttgggtttgagcctcaaatt
aggtctattgttggtcagattcgaccagaccgacagacattgctcttttctgcaacaatg
cctcgtaaagttgaaaagttggctagggagattctctctgatcctataagagttacagtg
ggtgaggtgggaatggccaatgaggatatcactcaggttgttcatgtaattccctctgac
gctgagaagttgccctggcttcttgagaagttacctgggatgattgatgagggtgatgtt
ctagtgtttgcttcaaaaaaggctgcagtggatgagatcgagtcacagcttgcacagaaa
ggttttaaagtcacagctctgcatggtgacaaggaccaggcatctcggatggatattctg
caaaaatttaaatctggcatttaccatgttcttgttgcaactgatgttgctgcccgtggt
cttgacatcaagtcaattaagtcagttgtgaactttgatattgcaaaagacatggacatg
cacgtccatcgaattggtagaacaggtcgtgctggtgataaggatggcactgcatacact
cttattacacagaaagaggcacgttttgctggtgagttggttaatagcttggttgctgct
ggtcagattgtttccacggagctcatggaccttgcgatgaaggatgggagattcaggtcc
aaacgtgattcaagaaaaggaggtggaaagaaaggtagagggaggggaggtggtggcggt
ggtggtcgaggtgtgcgtggggtggattttggtctgggaattggatataatacggaatcc
aataattcttcatcgcataccgttgctagtcgacctgctacagtaactcctgtgaggaca
ggaatgatgtcacagttcaagactaaattcgttgctgcttcatccaactctccaagtcaa
gcttcaggtaacagctatagtgcacccagcagaccagcattacgaggatttgtatctggt
ggttcaattggtggggatgtatatagaactcaggcaaccagtacaattactcctgctctt
actcccgctcctactcccgctcctacatcttctcagaactctggagtaaatgcaaatcag
aagccctctgaaagttctagagataaacctagagaaaggcggaggcgctctggttgggac
tgttga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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