KEGG   Methylomonas denitrificans: JT25_013810
Entry
JT25_013810       CDS       T04191                                 
Name
(GenBank) recombinase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
mdn  Methylomonas denitrificans
Pathway
mdn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JT25_013810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdn03019]
    JT25_013810
   03400 DNA repair and recombination proteins [BR:mdn03400]
    JT25_013810
Enzymes [BR:mdn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     JT25_013810
Messenger RNA biogenesis [BR:mdn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     JT25_013810
DNA repair and recombination proteins [BR:mdn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      JT25_013810
SSDB
Motif
Pfam: UvrD-helicase DEAD Helicase_C AAA_19 UvrD_C UvrD_C_2 Viral_helicase1 AAA_22 AAA_30 DUF4194
Other DBs
NCBI-ProteinID: AMK77544
UniProt: A0A126T704
Position
2992175..2997337
AA seq 1720 aa
MAQSPGKTRAKCLCIDIETARQDSLRLREIGAYRPDTDARLRISGKAADLQQKLDQISEG
AAFVLGHNVIAFDQPALSVLHPDLALYRLPLVDTLELSPVAFPQNPYHRLVKDYKLCTTT
RNDPVRDAELAYELFLDQAAALRQRVAEHPDEALCLHFLLAPENGKGVANFFASLRAALR
PSLIDVQAAWRRATDGKVCRAGQQQVVNDYLPDPAWHKSLAYVLAWLRVAGGNSVLPPWV
SLSFPKTRELIAALRDVPCDAAECDWCREQHDLSQLLPRYFPGITQFRAMPTTEDGRSLQ
QVIVEHGFAGTPTLAILPTGGGKSLCYQLPALARFYRNGSLTVIISPLQSLMKDQVDNLE
ARGITCAGYINSLLNPMERQVMLDKLRLGDLGLIFVAPEQFRSSAFAKALQHREVGAWVF
DEAHCLSKWGHDFRPDYLYVSRFIKARQKNKPSPVFCFTATAKPDVVQDIVEHFHKRLGI
TLACLTGGVNRENLLYEVHAVPAQAKYPEVLRLLEQSLRDEGGAIVFCARQKTVEEMAEF
LKQAGLDCGYFHGGMQPEQKRQVQEAFIAGELRVIAATNAFGMGVDKADVRLVIHLDTPG
SLENYLQEAGRAGRDQDLARCVLLYDDADLDVQFRLLRNSRLTQHDIVAILKALRSIERK
DRSEGSVVVTSGEILLEIPDKHGIDPDAADADTKVRIAVAWLEEARLLERQENHTRVFPG
SLQVASIDEARVLLQKKLGPNADIEPYIALLSQLFYSEDDEGISTDDLMLATGRNSHEVQ
SMLRELDRFKLVSNDTEIGVTLYRDPDTVDRLADLRKLEDALIASLREAAPDADREQWQI
LNVRRLCDTLRREAGVELTPDKLTRLMKSFAEAFGDGTGLRGFFALRPAGQDNRYLKLLR
SWQDIDLIRHKRMRLSQALLNYFLAKRQGNNLLVTCKQGDLEAALQADLTLQDMEVRDWQ
VALAAALIYLDSNEVLHLARGKAVFRAAMSIQLNAEARRRQFKKSDYTELALHYKDKIIQ
VHVMAEYARLALGKIQAAMAFIVDYFGMDRQEFVRRYFSGRQDILEMATTEAAHRRILTD
LQNPEQQAIVAAPPEGSQLVLAGPGSGKTKVIVHRVAWLLRECMVLPEDIMVLSYNRSAA
VEIRKRLWALIGADAAGVTVQTLHGLAMRLTGTSYAVAAEHGETVDFSAVIKNATALLKQ
AEQGDELGPGIQRDRLLSGLRYLLVDEYQDINSEHYELISALAGRAINSEEDKLSLLAVG
DDDQNIYAFGGANVRFIKQFTEDYQAKTYYLIENYRSTAHIVHCANRVIAPARERMKTQH
AIQINFARRETVDGGEFAALDSLTQGRVHILETPDQLNGEVEVALAELVQLNSLANAGQT
SHWGCFAVIARHWDTLEPMAELCRLQGISVLLLRDDYLLNLHTTREGHGLLALLNKQRRK
ARSARVLLRWGALSRWFKRRYRQAVDDLIEHPYRAMLAQFIIAVEAAAPSCQQVVSNLVE
ALYEFGSGSQSGENDSRHAPLLLLTAHRAKGLEFDHVLILDGGGWQQASDEERRLFYVAM
TRARKTLTLCVKRGGWHAFIRDCEMLCVKTQPQHTADFRQLGQRTWLADLGQVVLSWPGY
FPPGKPIHRAIAALDVGSELLLRARSDGQAGWELADVNGVAVTRMAQAFTPPKGQIIKVR
VAAISVRHKTAGNTENLRCERWELVLPEILYLPCANDGQT
NT seq 5163 nt   +upstreamnt  +downstreamnt
atggctcaatcacccggcaaaacccgagccaagtgcctgtgcatcgacatcgaaaccgcg
cggcaagacagtttgcggctgcgggaaatcggcgcttaccggcctgacaccgatgcgcgc
ttgcgtatatccggtaaggctgccgatctgcagcaaaagctggatcaaatcagcgaaggc
gcggcgtttgtgttggggcataacgtgattgccttcgatcagcctgctttgtcggtattg
catccggatttggccctgtaccgcttgcccctggtcgatacgctggaactgtcgccggtg
gcttttccgcagaatccctatcaccgcttggtgaaggactacaaactctgcacaaccact
cgcaacgatccggtccgcgatgcggaactggcttacgagctgtttctggatcaggccgcg
gccttgcggcagcgggtggcggagcatcccgacgaagcgctgtgtctgcattttttattg
gcgccggagaacggtaaaggcgtggcgaatttttttgccagcttgcgcgcggcgttgcgg
ccttcgttgatcgatgtgcaagccgcctggcggcgggcgaccgacggcaaggtgtgccgg
gcaggacagcagcaagtcgttaacgactatttgcccgaccctgcttggcataagtctttg
gcttatgtgctggcctggctgcgggtggcgggcggtaattcagtgttgccgccctgggtg
agtttgtccttcccgaaaactcgggagttaattgcggccttgcgcgatgtgccttgtgac
gctgccgagtgcgactggtgccgggagcagcacgatctgtcgcaactgctgccgcgctat
tttccggggataacgcaattccgtgcgatgccgactaccgaggacggcaggtccttgcag
caagtcatcgtcgaacacggttttgccggcacgccgaccctggcgattctgccgaccggc
ggcggcaaatccttgtgttatcaactgccagcgctggcgcgtttttatcgcaacggcagt
ctgaccgtgatcatctcgccactgcaatccctgatgaaggatcaggtcgataacctggaa
gcgcgtggcatcacctgcgccggatacatcaacagcttgctgaatcctatggagcggcag
gtgatgctggataaattgcggctgggcgatttgggcttgatctttgtcgcgccggaacaa
tttcgcagcagcgcgtttgccaaggctctacagcatcgggaagtcggagcttgggtattc
gatgaggcgcattgtctgtccaaatggggacacgattttcgcccggattacttgtatgtg
tcgcgctttatcaaggcccggcaaaagaacaagccctcgccggtgttttgttttaccgcc
accgccaagccggacgtggtgcaagacattgtggagcattttcataagcgcctgggcatt
acgctggcctgtttgaccggcggcgtcaaccgcgaaaacctgctgtacgaagtgcatgcg
gtgccggcgcaagccaaatatccggaagtgctgcgtttgctggagcaaagcttgcgcgac
gagggcggggctatcgtgttttgcgcccggcagaaaaccgtggaggaaatggctgaattt
ttgaaacaggccggtctggattgcggctatttccacggcggtatgcagcccgagcaaaag
cgccaagtgcaggaagcctttatcgccggcgaactgcgggtgatcgccgccaccaatgcc
tttggcatgggcgtggataaagccgacgtgcggctggtgattcatttggatacgccgggc
tcgctggaaaactatttgcaggaagcgggccgtgcggggcgcgaccaagacttggcgcgg
tgcgtattgttgtatgacgatgccgatctggatgtgcagtttcgcttactgcgcaattcg
cggctgacgcagcacgatattgtcgcgattttaaaggcgctgcgcagcatcgagcgcaaa
gatcgcagcgaaggttcggtggtggtcaccagcggcgaaatcctgctggaaattccggac
aagcacggcatcgatcccgacgccgccgatgccgacaccaaggtgcgcatcgcggtggcc
tggctggaagaagcgcgtttgctggaacgccaggaaaatcatacccgcgtgtttccgggc
agcttgcaggttgccagtatcgacgaagcccgcgtgttgttgcagaaaaagctggggccg
aacgccgacatcgagccttatatcgcattgttatcacagctgttttatagcgaagacgac
gaaggcatcagcaccgacgacttgatgctggctaccggccgcaactctcacgaagtgcag
agcatgttgcgcgagctggaccgctttaaactggtgtccaacgataccgaaatcggcgtg
acgctgtaccgcgatcccgatacggtcgaccggttggcggacttgcgcaaactggaagat
gcgttgattgccagtctgcgcgaggccgcgccggacgcggatcgcgagcaatggcagatt
ctgaatgtacggcggctgtgcgataccttacgccgggaggctggtgtggagctgacgccg
gataaattgacccgactgatgaaatcgtttgccgaagcgtttggcgatggcaccggtctg
cgcggtttttttgcgttacgtccggccgggcaggataaccgctatctaaaattgctgcgc
agttggcaggacatcgacctgatccggcataagcgcatgcggctgtctcaggccttgctg
aattattttctagcaaagcggcagggcaataatctgctggtcacctgtaagcaaggcgat
ttggaagcggctttgcaagccgatctgactttgcaggatatggaggtgcgcgactggcag
gtggcattggcggcggcgctgatttatctggacagcaacgaagtattgcatctggcgcgc
ggcaaggcggtgtttcgcgcggcgatgagcatccagctgaatgccgaagcccggcgccgg
cagtttaaaaaatccgattacaccgagctggccttgcattacaaggacaagattatccag
gtgcatgtgatggcggaatatgcccggctggcgctgggcaagattcaggcggcgatggcg
tttatcgtcgattactttggcatggacagacaggaattcgtgcgccgctatttttccggc
cgccaggatattctggaaatggccaccaccgaagccgctcatcggcgcattctcaccgat
ctgcaaaatcccgagcagcaagccatagtcgccgcgccgcccgaaggcagtcaactggtg
ctggctggccccggttccggcaagaccaaggtcatcgtgcatcgggtggcgtggttgctg
cgcgaatgcatggtgttgccggaagacataatggtgttgagctacaaccgctctgctgcg
gttgaaatccgcaaacgcttgtgggccttgatcggtgccgatgctgctggggtgaccgtg
caaaccttgcacggcctggcgatgcgactgaccgggacaagttacgcggtggccgccgag
catggcgagacagttgatttttcggcggttatcaaaaacgccaccgcgctgttaaaacaa
gcggagcagggcgacgagctggggccgggcatacaacgcgaccgcttgctgtccggtttg
cgctatttattggtggacgaatatcaggacatcaactccgagcattacgaactgatcagt
gcgcttgccggcagagctatcaacagcgaggaagataaattgtcgctattggcggtgggc
gacgacgatcagaatatttacgcgttcggcggtgcgaatgtgcgcttcatcaaacagttt
accgaggactatcaggccaagacctactacctgatcgaaaattaccgctccacggcgcat
attgttcattgcgcgaatcgggtgattgccccggctcgggaacggatgaaaactcagcac
gcgatccaaatcaatttcgcgcgccgcgagacagtggatggcggcgaatttgccgcgctg
gatagtttgacgcaaggccgagtgcatatcctggaaacgcccgatcagctgaatggcgaa
gttgaggtggcgctggctgaactggtgcagctgaacagcttggcaaatgccgggcaaacc
agtcattggggctgctttgcggtgatcgctaggcattgggacacgctggagccaatggcc
gaattgtgcaggttgcaaggcatttcggtactcttgttgcgggacgattatttgctgaat
ttgcataccacccgggaaggtcatggtttgctggccttattgaacaaacagcggcgaaaa
gctcgcagcgcgagggttttattgcgctggggggctttgtcgcgctggtttaaacgccgt
tatcggcaggctgtcgatgatctgattgaacatccatatcgagccatgctggcgcaattc
atcattgccgtggaagcggctgcgcctagttgccagcaggtggtcagcaatctggtcgag
gcgctgtacgaattcggttccggtagccagtccggcgaaaacgacagccggcatgcgccg
ctgctgttattgacggcgcaccgcgccaagggcttggaattcgatcatgtattgattctg
gatggcggcggctggcagcaagctagcgacgaagagcggcgactgttttatgtggcgatg
acgcgtgccaggaaaaccctgactttgtgcgtcaagcggggcgggtggcatgcttttatc
cgggattgcgagatgctttgcgtcaaaacccagccgcaacatacagcggattttcggcaa
ttggggcaacgcacttggctggcggatttggggcaagttgtcctgtcttggcccggctat
tttcctcctggtaagcccatccaccgggcgattgctgcgctggacgtgggtagcgagttg
cttttgcgggctagaagcgatggacaagctggttgggaactagcggatgtaaatggagtg
gcagtgacccggatggcacaggcctttacgccgccaaaaggccagatcataaaggtgcga
gtggcggcgatttcggttaggcataaaaccgctggcaacactgaaaatctgcggtgcgag
cgttgggagttagtgttgccggaaattctatatttgccgtgtgcaaacgacggacagact
tga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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