KEGG   Monodelphis domestica (gray short-tailed opossum): 100016711
Entry
100016711         CDS       T01031                                 
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
mdo  Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100016711 (CNOT4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mdo03000]
    100016711 (CNOT4)
   03019 Messenger RNA biogenesis [BR:mdo03019]
    100016711 (CNOT4)
   04121 Ubiquitin system [BR:mdo04121]
    100016711 (CNOT4)
Enzymes [BR:mdo01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     100016711 (CNOT4)
Transcription factors [BR:mdo03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    100016711 (CNOT4)
Messenger RNA biogenesis [BR:mdo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100016711 (CNOT4)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     100016711 (CNOT4)
Ubiquitin system [BR:mdo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    100016711 (CNOT4)
SSDB
Motif
Pfam: zf-RING_4 RRM_1 zf-C3HC4_3 zf-UDP zf-C3HC4_2 zf-RING_2 Rtf2 Nup35_RRM_2 DZR_2 zf-CCCH_2 Torus zf-C3HC4
Other DBs
NCBI-GeneID: 100016711
NCBI-ProteinID: XP_001367536
Ensembl: ENSMODG00000014068
UniProt: F6TSV4
Position
8:complement(196177668..196281821)
AA seq 710 aa
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQSPIDKPSDSLSIGNGDNSQQISNSDTPSPP
PGLSKPNPAIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSND
WPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIEKEL
SVQDQPSLSPTSLQNPSSHTTTAKGPGPGFLHPAAPTNANSLSSTFSVLPQRFPQFQQHR
AVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHSTGLGGIPIAD
NNSSVESLNMKEWQDGLRALLPNININFGGLPNASSPSNANHSAPTSNTATTDSLNWDSP
GSWMDPAIITGIPASTGNNLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSNPFSTQ
IPLHRASWNPYSPPSNPTSFHSPPPGFQTAFRPPSKTPTDLLQSSALDRH
NT seq 2133 nt   +upstreamnt  +downstreamnt
atgtctcgaagtcctgatgcaaaggaagaccctgtggaatgccccctttgcatggagccc
ttagagattgatgatatcaactttttcccttgcacttgtggctaccaaatttgccgtttc
tgttggcatcgtattcgcactgatgagaatggactttgtcctgcttgcagaaagccatat
ccagaagacccagcagtgtataaaccactttcccaagaagaactgcaaaggataaagaat
gagaaaaaacagaagcagaatgaaaggaaacagaagatatcagagaatcgcaaacacttg
gccagtgtacgtgttgtacaaaagaacctcgtttttgtggtaggactctcccagcgttta
gcagacccagaggttttaaaaagaccagaatattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcatatgcaggctcacagggtccaagcgccagtgcttac
gtcacctacatccggtcagaagatgctctcagagccatacagtgtgtcaacaatgtagta
gtagatggcagaacacttaaggcttctctaggtacaacaaaatactgcagttacttccta
aagaatatgcaatgtccaaaacccgactgcatgtatctacatgaattgggggatgaagca
gctagcttcacaaaagaggaaatgcaggcgggtaaacaccaagagtatgaacagaagcta
cttcaagaattatataaattaaaccccaattttcttcagctatctacgggttccgttgac
aagaataagaacaaagtgacaccactgcagagccccattgacaaaccttcagattccctc
agtatagggaatggtgacaattcacaacagatatctaatagtgatacaccgtcaccacct
cctggtttatcaaaacctaatccagccatccccatcagttcatctaatcacagtgcaagg
tccccttttgaaggggcagtaacagagtcacagtcactattctcggacaacttccggcat
cccaaccccattcctagcgggctaccccctttccccagctccccacagacttccaatgac
tggccaacagcaccagaaccacagagcctcttcacatcagaaacaattccagtgtcatcc
tctacagactggcaagcagcatttggctttggttcctctaaacagcaagaggatgacttg
gggtttgacccctttgatatcactcgaaaagccttagcagacctaattgagaaggaactg
tcggtccaagatcaaccctccctttcgcccacatctcttcagaacccttcctcacacact
acaaccgccaaagggcctggccctggatttctgcatcctgctgcacccacaaatgccaac
tctctcagtagcaccttttcagtcttgccacagaggttccctcagtttcagcaacaccgg
gcggtttataattcattcagttttccaggccaggcagcccgctatccttggatggccttt
ccacgaaatagcatcatgcacttgaaccacacagcaaaccccacctcaaatagtaatttc
ttggacttgaatctcccgccacaacacagcacaggtctgggagggatccctatagcagac
aacaacagttctgtagagagtttaaatatgaaggaatggcaggacgggctaagggcactt
ctacccaacattaacatcaactttggtggactgcccaatgcttcttccccctccaacgcc
aaccacagtgcaccaacgtccaacactgccaccaccgacagcctgaattgggacagccct
ggcagctggatggatcccgccatcatcacaggtatcccagcatcaacaggaaataattta
gactctcttcaagacgacaatcctccacactggctaaaatcccttcaggccctcacagag
atggacggccccagtgctgctccatcacaaacccaccacagtaaccccttcagcacacag
atccctctgcacagagccagctggaatccttactctcccccttcaaatcccaccagtttc
cattccccacccccaggctttcagaccgccttcagaccacccagcaaaaccccgacagat
ttactacagagttcagcattggaccgccattag

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (50)   

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