KEGG   Methylorubrum extorquens AM1: Mex_2p0399
Entry
Mex_2p0399        CDS       T00921                                 
Name
(GenBank) putative ATP-dependent DNA helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
mea  Methylorubrum extorquens AM1
Pathway
mea03420  Nucleotide excision repair
mea03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mea00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Mex_2p0399
   03430 Mismatch repair
    Mex_2p0399
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mea03400]
    Mex_2p0399
Enzymes [BR:mea01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Mex_2p0399
DNA repair and recombination proteins [BR:mea03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Mex_2p0399
   MMR (mismatch excision repair)
    Other MMR factors
     Mex_2p0399
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30 AAA_11 DEAD PhnG IPPT DUF2112 DUF3549 ResIII
Other DBs
NCBI-ProteinID: ACS43251
UniProt: C5B469
Position
megaplasmid:339476..341476
AA seq 666 aa
MPPTEDRHGGPEDTHARILSGLNDQQQAVVLASEPDVAVVAGAGSGKTETLTRRIARLVL
DGVDPERILAITFTKQAAQNMRDRAARYVPDARRIRLGTFHSVAHALVMENRHAMRLPDK
ISILDTEDAVASLKKVAAALRTNEENLPRASTINKILSFSRNTERTIEDVVHSNYPQYIH
AIEFVEKVGAAYTQFRRKNALFDYDGLLEALAKMLEHERLGPAIAAMFEEALIDEAQDLN
ALQIRIVRALRRHDVRVMFVGDPSQSIYQFRGASPDIMFTLVKECSAKVYLLETNYRSSA
EILDVANAVEEAMRKRIPRALVSHCGTSGLLPRLIEVDDKAAEAAAIVDAILDRKNEGME
LEEQAIVVRSTANFRHVEAELIARKVPYTVRAGVKVTEAGAVRDLLCVARASLNLGNEPA
WQRILQLAPRVGERKAAKMVEAISASGSLQNAIGIILDAGVRNESLRPVAHALRLVDDER
GGPPAARLRLALNALEPLLEAEYRDDWKARKADVVAVIDIAHQHADLDSFVSSLTIETSI
EKTRSGTADPNEEPPLTLTTIHSAKGLEWQAVYVPSMIEGHIPTMYAQAPDDVDEELRAF
YVLVTRAKTHLEFFKPTVMPDGMLRTASRFEGVIRDFCERERGSRAPRGRRGGIGARIEP
EAIELW
NT seq 2001 nt   +upstreamnt  +downstreamnt
gtgccgccgacagaagaccgccatggcggcccggaggatacgcatgcacggatcctctcg
ggcctgaacgatcagcagcaggccgtggtgctcgccagcgaaccggacgtggccgtcgtc
gcgggagccggctcgggcaagaccgagaccctcacccgccgcatcgcacggctcgtcctc
gacggggtcgatcccgagcgcatcctcgccatcaccttcacgaagcaggccgcgcagaac
atgcgcgaccgcgccgcccgctacgtccccgacgcgcgccgcatccgtctcggcaccttc
cactccgtcgcccacgcgctggtgatggagaaccgccacgccatgcggctgcccgacaag
atcagcatcctcgacaccgaggacgcggtcgcctcgctgaagaaggttgcggccgccctg
cgcacgaacgaggagaacctcccgcgcgcgagcaccatcaacaagatcctgagcttctcg
cggaacacggagcggacgatcgaggacgtcgtccacagcaactatccgcaatacatccac
gccatcgagttcgtcgagaaggtcggcgccgcctacacccagttccgccgcaagaacgcg
ctcttcgactacgacggcctgctggaggcgctggcgaagatgcttgagcacgagcgtctc
ggccccgctatcgcggcgatgttcgaggaggccctgatcgacgaggcccaggacctcaac
gccctccagatccgcatcgtgcgcgcgctgcggagacacgacgtccgggtcatgttcgtc
ggcgatccctcgcagtcgatctaccagttccggggcgcatcaccggacatcatgttcacg
ctcgtcaaggagtgctcggccaaagtctacctcctggagacgaactaccgttcgagcgcc
gagatcctcgacgtcgccaacgccgtggaggaggccatgcgcaagcgcatcccgcgcgcg
ctcgtctctcattgcgggacctccggcctcctgcccaggctgatcgaggtcgacgacaag
gccgccgaggccgcagccatcgtcgacgcgatcctcgaccgcaagaacgaaggcatggag
ctggaggagcaggcgatcgtcgtccgctcgaccgcgaacttccgccacgtcgaggccgag
ctgatcgcccggaaggtgccctacacggtgcgcgccggcgtgaaggtcaccgaggccggc
gccgtgcgcgacctcctctgcgtggccagggcctcgctcaatctcggcaacgagcccgca
tggcagcgcatcctgcagctcgcgccgagggtcggcgagcgcaaggcagccaagatggtc
gaggcgatctccgccagcggctcgctgcagaacgcgatcgggatcatcctcgatgcgggc
gtcaggaacgaatccctcaggccggtcgcgcacgctctgcgcctcgtcgacgacgagcgg
ggcggaccgcccgcggcacggctgcggctcgccctgaacgccctcgagcccctgctcgaa
gccgagtaccgggacgactggaaggcccgcaaggcggacgtggtggccgtgatcgacatc
gcccaccagcatgccgacctcgactccttcgtcagctcgctcaccatcgagacctcgatc
gagaagacgcggtccggcacggccgacccgaacgaggagccgcccctgacgctcaccacg
atccactcggccaagggcctcgaatggcaggccgtatacgtgccgagcatgatcgagggg
cacatccccacgatgtacgcccaggcgccggacgacgtcgacgaggaactgcgcgccttc
tacgtgctggtgacgcgggcgaagacccacctcgagttcttcaagccgaccgtcatgccc
gacggcatgctgcgcaccgcctcccggttcgaaggcgtcatccgcgacttctgcgagcgg
gagcgcggctcgcgcgccccccggggccgccgcggtggcataggcgcgcggatcgagccc
gaagcgatcgaactgtggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (23)   

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