KEGG   Methylophaga frappieri: Q7C_1295
Entry
Q7C_1295          CDS       T02056                                 
Name
(GenBank) Ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
mec  Methylophaga frappieri
Pathway
mec03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mec00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Q7C_1295
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mec03019]
    Q7C_1295
   03009 Ribosome biogenesis [BR:mec03009]
    Q7C_1295
Enzymes [BR:mec01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Q7C_1295
Messenger RNA biogenesis [BR:mec03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Q7C_1295
Ribosome biogenesis [BR:mec03009]
 Prokaryotic type
  rRNA processing factors
   Q7C_1295
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: AFJ02445
UniProt: I1YHQ2
Position
complement(1321076..1323520)
AA seq 814 aa
MKRILINATHEEELRVAMVDGQKLFDLDIDTPSREQKKGNIYKGKITRVEPSLEAVFVEY
GAERQGFLPLKEIAKAYFRPSKNSSEDNGRINVQDVLSVGQELVIQIEKEERGNKGAALT
TFISLAGRYLVLMPNSPRAGGISRRIEGDDRAELQEALRQLDIPDGMGMIVRTAGVGKQS
EELQWDLEYLLQLWTAIDTATKDRPAPFLVYQESNIIIRALRDYLRKDIGEILVDSPDVY
QTGYDFMRMVMPHDLSKFKLYQDRVPLFTRYQVESQIESAFRHEVRLPSGGALVIDPTEA
LVSIDVNSARANKGGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMGPSRHQRE
VENRLREHLKADRARVQVGRISRFGLLEMSRQRLRPALGDAHQEVCPRCAGLGHVRGVES
LGLAVLRLMEEEASKDKITQLVVQLPVAVATFMLNEKRHQIDIIEKRHNVRLMLIPNPHL
ETPHYDIERVREGSERSANSHEMLNTPEPELPAVLKDKPAMEQPAVTGVAPSAPAPIISK
PADTPRPPSLLKRLLGVLTGQSDAIEKDNAVIQSADTEETNGDKRSQTNRRARGGRNQNR
RGSGNRQQRQEKSSPESNNNETTAKEQDEKPSRQRRSRRDKDSVDKNNEVTDVNDTASQP
TETDQDKERTRNSRRSRRGGRRRRSSRQDNEGGSNIAAPVSDDAGNRLPPAKQEVDGNAL
PSPEPEINGNVKKSSQNPAEADGNSVKPAKPPRRSRSSQSGSNNRRRRSDKPLAADSSEE
KKTLAKSDTPVDNENKKPATRVAEATVESDASEK
NT seq 2445 nt   +upstreamnt  +downstreamnt
atgaaacgaattttaattaatgcgacacacgaagaagagttgcgtgtcgcgatggttgat
ggccagaaactgttcgatctggacatcgacactccctcccgagaacaaaaaaagggcaat
atttataaagggaaaatcacccgcgttgagcccagcttggaagctgtttttgtcgaatac
ggtgctgagcgtcaaggttttctgccactaaaagaaattgccaaagcgtatttccgaccc
agtaaaaacagcagtgaagacaatggacgtattaatgtccaggatgtgctttctgttggc
caggaactggtcattcaaattgaaaaagaagagcgtggtaacaaaggggcagcgctgact
accttcatcagtctggctggtcgttaccttgttttaatgcctaatagtccacgtgctggc
ggaatttctcgccgcatagaaggtgatgatcgggctgaattgcaggaagcactgcgacag
ctggatattccggatggcatgggcatgattgtgcgaacggctggggtaggcaagcaatct
gaagagttgcagtgggatctggagtatctgctgcaattatggacggcaattgatacggca
acaaaagaccgaccagcgccatttttagtctaccaagaaagcaacatcattattcgtgcg
ttgcgtgattatctgcgtaaggatattggtgaaattctggtcgactcacccgacgtttac
caaacgggctatgattttatgcgcatggtcatgccgcatgatctgagtaagttcaagctg
taccaggatcgcgtccctttatttacgcgctatcaggtcgaaagccagatcgagagtgct
ttccggcacgaagtgcgtttgccttcggggggcgccttggtcatcgatccaaccgaagca
ttggtttccattgatgtgaattcagccagagccaacaagggtggcgatattgaagaaacg
gcgctcaataccaaccttgaagcagcggaagaaattgcacggcaattacgcttgcgagat
ttaggcggtctggttgttattgactttattgatatggggccaagtcgccatcagcgcgaa
gttgaaaatcgacttcgtgagcatttgaaggccgatcgggctcgggtgcaggtcgggcgg
atttctcgttttggtctactggaaatgtcacggcagcgactgcgtcctgctttgggtgat
gcccaccaggaagtgtgtccaagatgtgctggtttaggtcatgttcgcggcgttgagtca
cttgggctcgcggtattacgattgatggaagaagaagcgagcaaagacaaaattacgcaa
ctcgtcgtgcaactaccggttgcggttgctaccttcatgctgaatgaaaagcgtcatcaa
attgacatcattgaaaaacgtcataatgtccgtctgatgttgataccgaatccacatctt
gaaacaccacattatgatatcgaacgtgtccgtgaaggcagtgagcgcagcgcaaatagc
cacgaaatgttgaatactccggaaccagagttgccggccgtattaaaagataaacctgcg
atggagcaaccggcggtaaccggtgtcgcgccatcagcaccggcacctatcatttcaaaa
ccggccgacacaccgcgtccgccaagtttgctgaaacgtttgctcggtgtgttgactggt
caaagtgatgcgattgaaaaagacaatgctgttatacagtctgctgataccgaagaaaca
aatggtgataaacgcagccaaactaatcgtcgtgctcgtggtggccgtaatcaaaatcgc
cgaggcagcggtaatcgtcagcagcgtcaggaaaagtcatcgccagaaagtaacaataat
gagacaacggcaaaggaacaggacgaaaaaccatcacgtcaacgtcgtagtcgccgtgac
aaagatagcgtcgacaaaaacaatgaagtcaccgacgtgaatgataccgcttctcaacct
acagaaactgaccaggataaagagcgtactcgaaatagtcgtcgatctcgtcggggagga
cgtcgtcggcgtagcagccgtcaggacaatgagggcggttccaacatagcggcacctgtc
tccgatgacgctggtaatcgactccctcctgccaagcaggaagtcgatggcaatgcactg
ccgtcgccggaacccgagattaatggcaacgttaagaaatccagccaaaacccggcagaa
gcagatggtaactcggtcaaaccggcgaagccgccaagacgtagcaggagcagccagtcc
ggcagtaacaatcgccggcgccgctccgataaaccattagctgcggacagcagtgaggaa
aaaaagacgctagccaaaagtgatacgccggttgataatgaaaataaaaaaccggcaacc
cgtgtcgcggaggctaccgtcgagagtgatgccagcgaaaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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