KEGG   Methylophaga nitratireducenticrescens: Q7A_2713
Entry
Q7A_2713          CDS       T02055                                 
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
mej  Methylophaga nitratireducenticrescens
Pathway
mej03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:mej00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Q7A_2713 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mej03400]
    Q7A_2713 (recD)
Enzymes [BR:mej01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Q7A_2713 (recD)
DNA repair and recombination proteins [BR:mej03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Q7A_2713 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 Viral_helicase1 UvrD_C_2 AAA_11 SLFN-g3_helicase RecD_N SH3_13 AAA_22 Helicase_RecD UvrD-helicase DEAD PIF1 UvrD_C AAA_16 nSTAND3 NTPase_1 Herpes_Helicase ResIII AAA_28 T2SSE AAA_5 CbiA SRP54 TrwB_AAD_bind DnaB_C AAA GvpD_P-loop Rad17
Other DBs
NCBI-ProteinID: AFI85499
UniProt: I1XM80
Position
complement(2522749..2524503)
AA seq 584 aa
MNALKLLREAGFSELAYQFAAYISRQQQNEEPIVTLTAGLLSETVSEGHVCLNLNDFQSL
NPVIQSAIPEATLWLDHLQNSEIIGAPGEFKPLVLTTDGLLYLYRYWQSEQQVAIAIQQR
LKDGETLPAAENLSTFMADWQNHLPDTDWQKVAVLSALRRQLCVISGGPGTGKTTVVLKI
LQCLQLNDDKPRVALAAPTGKAAARLQQAISQHTGEQYVAKTLHRLLGISARFDQGRYSA
ERPLPVDVLIVDEASMIDINLMATTLKVLPLHARLILLGDSDQLASVESGAVLANLCADT
PDFSADFRSWVKQISEIELPVSRDDNLLQDSLVKLKHSYRFAAGGLVGQLAQAVNRGDAG
QVTDLLVNQSLSALSVPSTENIQTQLLNGYQRFIETIEKRADAVSCIQAFEAYRMLCAVK
NRPQSVYSVNQLMSQLLAKRGWRTAQPYYPGRPVMITQNHYRQNLFNGDIGLVLPNADGE
LQACFLFGEELRWLPLSRLPAHETVFAMTVHKSQGSEFDHVSLLLPQEDSAVLSRELVYT
ALTRARQTVNILSTQPVLQQAVLRRHQRESGLAQLLANIRQTIS
NT seq 1755 nt   +upstreamnt  +downstreamnt
atgaatgccttgaaactactgcgagaagcggggttttccgagctggcttatcagtttgca
gcctatattagccgtcagcaacagaatgaagagccaatcgttaccctgacggctgggctg
cttagcgaaaccgttagtgaaggccatgtgtgtctgaatctgaatgactttcaatcactt
aatccggttattcagagcgcgatccctgaagcgacactgtggttggaccatctgcaaaac
agtgaaattatcggtgctcccggcgagtttaaaccgttagtgctgacaaccgatggcttg
ttgtacctgtatcgctactggcaatcagaacaacaggtagcaattgccatacaacagcga
ctgaaggacggggaaaccctgccagctgcagaaaatctgtcgacatttatggcggattgg
caaaatcacctacccgataccgactggcagaaagttgcggtgttaagtgcattacgccga
cagttgtgtgtgatttcaggtggtcccggcaccgggaaaaccacggtggtgttaaaaatt
ctgcaatgtctgcaattaaacgacgataaaccgcgggtagctttggcggctcctacaggc
aaagctgcggctagactgcaacaagcaatcagtcagcatactggtgagcaatatgttgct
aaaacgctgcatcgcttactgggcatcagtgcacgttttgatcaggggcgctattcagca
gaacggccattgccggttgatgtgctgattgttgatgaagcgtcgatgattgatatcaat
ctgatggcgactacactgaaagttttaccattgcacgcgaggttgattttattgggcgac
agcgatcaattagcctcagtcgaatccggcgcagtactcgctaacttatgtgccgacaca
ccggatttttcggctgatttcagatcctgggtgaaacagatcagcgaaatagagctaccg
gtttcgagggatgacaatctcttgcaggattcgctggtcaaattaaagcacagctatcgt
tttgcagcgggaggactggtcggtcaactggctcaggcagtcaatagaggagatgctggt
caggtgacggatttattggtaaatcaatctttatccgccttaagtgtgccttcaacagag
aatatacaaacccagttactcaacggatatcagcgttttatcgagactatcgaaaaacgg
gcagatgcggtgagttgtattcaggcatttgaagcgtatcgaatgctttgtgcggtgaaa
aatagaccgcaatcggtgtattcagtgaatcagctgatgagccagttgctggcaaaacgt
ggctggcgaacagcgcagccatattatcccggacggccagtgatgattacgcagaatcat
tatcggcagaatctgtttaatggcgatattggtttggtgttgccgaatgccgacggtgaa
ctgcaggcctgttttctattcggtgaggagttacgctggttgccattaagccgtttaccg
gcgcatgaaacagtgtttgcgatgacggtgcataaaagccagggatcagagtttgaccac
gtctcactgttactaccccaggaagattcggccgtgttaagtcgggagctggtttatacc
gcgctcaccagagcgcgacaaacggtgaatatcttgtcgacacagcctgttttgcagcag
gctgttttacgtcgacatcaacgggaaagtggtttggcgcagttacttgccaatatccgc
cagacgatttcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (29)   
   Pfam (29)   
All databases (63)   

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