KEGG   Methanoculleus bourgensis MAB1: MMAB1_0658
Entry
MMAB1_0658        CDS       T04314                                 
Symbol
lig
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mema  Methanoculleus bourgensis MAB1
Pathway
mema03030  DNA replication
mema03410  Base excision repair
mema03420  Nucleotide excision repair
mema03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mema00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MMAB1_0658 (lig)
   03410 Base excision repair
    MMAB1_0658 (lig)
   03420 Nucleotide excision repair
    MMAB1_0658 (lig)
   03430 Mismatch repair
    MMAB1_0658 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mema03032]
    MMAB1_0658 (lig)
   03400 DNA repair and recombination proteins [BR:mema03400]
    MMAB1_0658 (lig)
Enzymes [BR:mema01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MMAB1_0658 (lig)
    6.5.1.6  DNA ligase (ATP or NAD+)
     MMAB1_0658 (lig)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MMAB1_0658 (lig)
DNA replication proteins [BR:mema03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MMAB1_0658 (lig)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MMAB1_0658 (lig)
DNA repair and recombination proteins [BR:mema03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MMAB1_0658 (lig)
   NER (nucleotide excision repair)
    Other NER factors
     MMAB1_0658 (lig)
   MMR (mismatch excision repair)
    Other MMR factors
     MMAB1_0658 (lig)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase CysG_dimeriser
Other DBs
NCBI-ProteinID: CVK31875
UniProt: A0A0X3BK57
Position
chrI:532192..533844
AA seq 550 aa
MQFLEFARICEHLEGISGRLDMIEQVSAVLPRLEDEELPIFVRFIMGRVFPDWSPKKLGV
GPNLLYDAVAYVVGTKRSAVREAINATGDAGLAIEDLLATKEQTSFFVQEMDLLEVYWDF
ERVAAAEGARSQREKLLVVRKLFANARPLEGRYLARLMLEELRIGMGEGSVRDAVARAFD
IDVRLVEHAHQAMNDLGEVALLARRDPAALSRVTIEPFRPVKMMLAQAGTIAGQIEDHGE
VAVEYKYDGSRFQFHKMGNICRIYSRRLEEVTGSLPDIVMHLGEATDHDVILDGEVVAVQ
DGRPMPFQYVIRRFRRKHQVNAMMEKIEVVPRVFDILYLDGETLMDRPLAERRRILEEVL
DAHIAPQFLVTDVAGAEAIYTEALNLGHEGVMVKVPSSPYTPGVRGRLWVKVKPGVETLD
LAVIGAEWGEGRRAKMFGSFLLAVQDQGRLLPVGKVATGITDEVLADLYALLKDSVIARS
GKEVTLEPKVVFEVGYSEIQASPNYASGYALRFPRFVQVREDKDVDEVETLDALVERYRQ
QKNGQGSSDP
NT seq 1653 nt   +upstreamnt  +downstreamnt
atgcagtttctggagtttgcccgtatatgcgagcacctggaagggatcagtgggcgcctg
gatatgatcgagcaggtcagcgccgtcctgccccggctcgaagacgaggaactccccatc
tttgtccgcttcatcatgggccgggtctttcccgactggagccccaaaaaactcggtgtg
ggcccaaatctcctctacgacgccgtcgcctacgtcgtcggcacgaagaggagtgccgtc
cgtgaggcgatcaacgcgaccggggacgccggcctggctatcgaggacctccttgcaacc
aaggaacagacatcgttcttcgtccaggagatggacctcctggaggtctattgggatttc
gagcgggtggcggccgctgaaggagcgcggtcccagcgggagaaactcctggtggtccgg
aaactcttcgccaacgcccgccccctggaagggcggtaccttgcccggctcatgcttgaa
gagctcaggattggcatgggtgaggggagcgtccgcgacgccgtcgcccgcgcctttgac
atcgacgtccgcctggtcgagcatgcccaccaggcgatgaacgacctcggggaggtggcc
ctcctcgccaggcgggaccctgccgccctctcccgggtgacgatcgagcccttccggccg
gtgaagatgatgcttgcccaggcaggcaccatcgccgggcagatcgaggaccacggcgag
gtggcggtcgagtacaagtatgacgggagcagattccagttccacaagatgggcaacatc
tgccggatctactcgcggcgtctggaggaggtcacggggagcctccctgatattgtcatg
cacctcggggaggccaccgaccatgacgtgatcctggacggtgaggtggtcgctgtccag
gacggccggccgatgccgtttcagtacgtgatcaggcggttccggcggaaacaccaggtg
aatgcgatgatggaaaagatcgaggtcgtaccgcgggtctttgacatcctctatctggac
ggcgagaccctgatggaccgccctctcgccgagcggcgcaggatcctcgaggaggtgctt
gacgcacacatcgccccccagttcctggtcaccgatgttgccggggcggaggcgatctac
accgaggcgttgaacctcgggcacgagggagtgatggtgaaggtgccctcctcgccctac
accccgggtgttcggggccgtctctgggtgaaggtgaaacccggggtggagacgctcgac
cttgctgtgatcggggccgaatggggcgaagggcggcgggcgaagatgtttggctcgttc
ctgcttgcggtccaggaccagggccggcttctccccgtgggcaaggtggcgaccgggatc
acggatgaggtgctggccgacctctacgccctcctcaaggatagcgtgatcgcccgctca
ggaaaagaggtcacgcttgagccgaaggtggtctttgaggtgggctactccgagatccag
gcaagccccaactatgcgagcgggtatgcgctcaggttcccgagattcgtccaggtgcgt
gaggataaggatgtggacgaggtcgagaccctggacgccctagtcgagcgttatcggcag
cagaagaacgggcaggggtcttctgacccctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (36)   

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