KEGG   Mesorhizobium sp. WSM1497: A9K65_004035
Entry
A9K65_004035      CDS       T04915                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mesw  Mesorhizobium sp. WSM1497
Pathway
mesw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mesw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    A9K65_004035
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mesw03400]
    A9K65_004035
Enzymes [BR:mesw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A9K65_004035
DNA repair and recombination proteins [BR:mesw03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A9K65_004035
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: ARP62645
Position
835761..838274
AA seq 837 aa
MASLEQYHSKRDFKKTAEPAGKVARTKQGGAGGIFVIHKHAATRLHYDLRLEHDGVLWSW
AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGTWIPEIDPAKA
MKKGHISFELRGHKLHGAWHLVRLKPRAGEKRDNWLLIKSDDAAARPGEDILKEAPESVK
SGLTIEEVGEGKTAKGEKPKVWHSNKPAAVKTKAGKRLDFIEPQLATLERDAPPGKDWLH
EVKFDGYRMQAQIAGTDVRLLTRTGLDWTKKFGGEIVAELAGLKCSDAILDGEVVVLADS
GVSSFALLQQDLSAKRTNRFIYYVFDLMRLDGQDLRREPLVERKQALQELLGEQSDNAAV
RFSDHFAEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPTWVKSKCTARQEFVIGGYLP
SDKTGRGLRSILVGFHEGGKLHYAGRVGTGFSGKGANELKAKLDALTAKSSPFSTAVPKG
KGLVWVKPELVGEVEFRSWTSDRIIRHASFQGLREDKPAEEVVQEKPKAATGKPSTGKST
AKPASGGKAAGSMTTTVKLSHPDKLLWPDENISKQGLLDHYAQVWPRMEQFVVNRPLSLV
RAPDGVGGQRFFQKHASAGMSDKIARMKDPTDGEEILFIRDFDGVAALVQYGVVEIHIWG
CTIDEIEKPDQIIFDLDPDEGVDVKAVREAALDIRGKLDELSLPNFVKTSGGKGYHVLVP
LKPCAEWDAVKGFAHDFARALEQGAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVAPYS
SRAKKGATVSMPVTWPEIEAGLPPNAFPIGDKTTLKQLAKADPWREFFKQGKALKRG
NT seq 2514 nt   +upstreamnt  +downstreamnt
atggccagcctcgaacaatatcattccaagcgcgatttcaagaaaaccgccgaaccggcc
ggcaaggtcgcccggaccaagcagggcggcgcgggcggcatcttcgtcatccacaagcat
gccgcgacgcggttgcattacgacttgcggctcgagcatgatggcgtgctgtggagttgg
gcggtgacgcgcggcccgagcctcgacccgcatgagaagcgactggctgtccatgtcgag
gatcacccgatcgactatgcgccgttcgaaggcaccattcccaagggcgaatatggcggc
ggttcggttatcgtttgggacgagggcacctggattcccgagatcgacccggccaaggcg
atgaaaaagggccatatcagcttcgagctcaggggacacaagctgcatggggcatggcat
ctggtgcggctgaagccgcgtgcgggtgaaaagcgcgacaactggctgctgatcaagtcg
gacgatgccgcagcgcgtcccggcgaggacatcctcaaggaagcgcctgaatcggtgaag
tccggcctgacgatcgaggaggtcggcgagggcaagaccgcgaagggcgagaagccgaaa
gtctggcattccaacaagccggccgccgtcaagacaaaagccggcaaacgcctcgacttt
atcgagccgcagctggccacgctcgagcgcgatgcgccgccgggcaaggactggctgcac
gaagtgaagttcgacggctatcgcatgcaggcgcagatcgccggcaccgatgtgcggctg
ctgacccgcaccggcctcgactggacgaagaaattcggcggcgagatcgtcgcggagttg
gccgggctgaagtgcagcgatgccatcctcgatggcgaggtggtggtgttggccgacagc
ggcgtctcgtctttcgcgctgctgcagcaggacctgtcggcgaagcggaccaatcgcttc
atctattacgtgttcgacctgatgcggctcgatgggcaggatcttcggcgcgagccgctg
gtcgagcgtaagcaggccttgcaggaactgctcggcgaacagtccgacaatgcggcggtc
cgcttcagcgaccatttcgccgaacccggcaagatcatgctggagcatgcctgccgcatg
ggcctggaaggcgtcgtctccaagcgtgccgatgcaccctaccgcagcggccgcggcccg
acctgggtcaaatcgaaatgcacggcgcggcaggaattcgtcatcggcggctacctgccg
tcggacaagaccgggcgcggactgcgctcgatcctggtcggcttccacgagggcggcaag
ctgcattatgccggccgcgtcggcactggtttttcgggcaagggcgccaatgagctgaag
gcaaaactcgatgcgttgacggcaaaatcatcgcccttctccaccgccgtgccgaagggc
aagggcctggtctgggtcaagcctgaacttgtcggcgaagtggagtttcgcagctggacc
tcggaccgtataatacgccacgcctcgttccaggggttgcgcgaggacaagccggcggag
gaagtcgtgcaggaaaagcccaaagcggcgacaggcaagccatcgacaggcaagagcacg
gccaagccggcatcaggcggcaaagccgccgggtcgatgacgaccacggtcaaactctcg
catcccgacaagctgctgtggccggacgaaaacatatccaagcagggcctgctcgaccat
tacgcacaggtttggccgcgcatggaacagttcgtggtcaaccggccgctcagcctggtg
cgggcgccggacggtgtcggcggccagcgtttcttccagaaacatgcctcggctggcatg
agcgacaagatcgcgcgcatgaaggacccgaccgacggcgaggagatcctgttcatccgg
gatttcgatggtgttgccgcactggtccagtatggcgtggtcgagatccacatctggggg
tgcacgatcgatgagatcgaaaagcccgaccagatcatcttcgatctcgacccggatgaa
ggcgtcgacgtgaaggcggtgcgcgaggcggcgctcgatatcagaggcaagctcgacgag
ctgtcgctgccgaatttcgtcaagacctcgggcggcaagggctatcacgtgctggtgccg
ttgaagccgtgtgccgaatgggacgcggtgaagggcttcgcccatgactttgcccgcgcg
ttggagcagggtgcccccgatcgctacacggcgacgctgtcgaaaaaagcgcgcacggga
aagatcttcgtcgactatctgcgcaacggcaggggctcgacgacggtcgcgccctattcc
tcgcgcgccaagaagggcgccaccgtgtcgatgccggtgacctggccagagatcgaggcc
ggcttgccgccgaacgctttcccgatcggcgacaagacgacgctgaagcagctggcgaaa
gccgatccgtggagggaatttttcaagcaggggaaggcgttgaagcgggggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

Download RDF
DBGET integrated database retrieval system