KEGG   Methanothermobacter sp. CaT2: MTCT_0612
Entry
MTCT_0612         CDS       T04009                                 
Name
(GenBank) exosome complex exonuclease Rrp41
  KO
K11600  exosome complex component RRP41
Organism
metc  Methanothermobacter sp. CaT2
Pathway
metc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:metc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MTCT_0612
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:metc03019]
    MTCT_0612
Messenger RNA biogenesis [BR:metc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MTCT_0612
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     MTCT_0612
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: BAM69861
UniProt: T2GHA6
Position
complement(601929..602624)
AA seq 231 aa
MKTSPSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQR
PDRAVIRCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEV
LEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEEDKEGQADVPV
AILPRTREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRKRYGE
NT seq 696 nt   +upstreamnt  +downstreamnt
ttgaagacctcccccagcgtcagggaggatggaagggcgtttgatgaactcaggccctta
aaaatcgaggcagggatacttgaaagggcagatggttcatcttaccttgaatttggcggt
aacaagatactggtggctgtatacggtccaagggaggctcagataagaaagctgcagaga
cctgacagggccgtcataaggtgcaggtacaatatggcaccattctcagttgaggagcga
aagagaccgggccctgacaggcgttccgttgagatctccaagataactgcagaggccctc
agaccggcactgatacttgaaaaattccccagatcagtcatcgatgtattcatagaggtg
cttgaggctgagggaggtacgaggtgtgctggcataacagcggcttcagtcgcccttgca
gatgcaggaatacccatgagggacatggttgttgcctgtgcagcaggtaaggtcggtgat
caggtggtccttgacctctctgaggaggaggacaaggagggccaggcagacgtaccggtg
gcgatactcccgaggacacgtgaaatcacactgctccagagtgatggaaacctcacaccc
gaggaatttgaaagggcacttgaccttgcagtggagggatgcctccggatacatgaggtg
cagaaggaggccctcagaaagaggtatggtgaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

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