KEGG   Methanothermobacter sp. CaT2: MTCT_0613
Entry
MTCT_0613         CDS       T04009                                 
Name
(GenBank) exosome complex RNA-binding protein Rrp4
  KO
K03679  exosome complex component RRP4
Organism
metc  Methanothermobacter sp. CaT2
Pathway
metc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:metc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MTCT_0613
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:metc03019]
    MTCT_0613
Messenger RNA biogenesis [BR:metc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MTCT_0613
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     MTCT_0613
SSDB
Motif
Pfam: ECR1_N KH_6 KH_1 RRP4_S1 S1 RRP40_S1 KH_2 GshA
Other DBs
NCBI-ProteinID: BAM69862
UniProt: T2GHJ3
Position
complement(602648..603583)
AA seq 311 aa
MLLVNEKDLVVPGQVLAENEYFPGRGTFKEDNRICSSFVGLVSVRNKKINVIPLQSKYIP
KRGDVVIGEITDIRFSMWGLDINSPYTGLLPASEVFGKDKRELESVFDIGDVLLLRVVDV
DEVKKVKLGLKGRGLGKFRDGILVYITPTKVPRLIGKRGSMINMVKEKTHCDIVVGQNGV
VWIKGEPDMERIAEKVVLMIDREAHTSGLTDRVRELLDRLTGVEPEIQVEESEGTEKPET
PESEDFEEASDYSEDVEVSPESEDIEEVSDESEDLEVESEDVEEGTDTPAAEEDDGEAGD
AEVKDENNSER
NT seq 936 nt   +upstreamnt  +downstreamnt
gtgctacttgtaaatgaaaaggacctggttgttccaggtcaggttctggcagagaacgaa
tatttccctggaaggggaaccttcaaagaggataacaggatatgttcatcctttgtggga
ctcgtttctgttagaaacaagaagataaatgtgataccacttcagagcaagtacatcccc
aagaggggggatgtggtgatcggggagataactgacatcagattctcaatgtggggactt
gacataaactcgccctacacaggtctcttaccggcctctgaggtctttggcaaggataaa
agggaacttgaaagtgtcttcgatataggggacgttctgcttttgagggttgtggatgtt
gatgaggttaagaaggtgaagcttggcctcaagggccgcggccttggaaagttcagggac
ggtatcctggtttacataacacccacaaaggtgccaaggctgataggcaaaaggggatca
atgataaacatggtcaaggagaagacccactgcgatatcgtggttggccagaacggtgtt
gtctggatcaagggtgaacccgacatggagaggatagccgagaaggtggtcctcatgata
gaccgtgaggcccacacctcaggactcaccgaccgtgtgagggaactcctcgacaggctt
acaggagtggaacctgagattcaggttgaggagtctgaagggacagaaaaacctgaaacc
ccggagtctgaggattttgaggaagcatctgattattctgaggatgtggaggtgtctccg
gagtctgaggacattgaggaagtatctgatgagtctgaagaccttgaagtggaatctgaa
gatgtggaagaaggaacagacacccctgctgctgaagaggatgatggggaagccggggat
gcagaagttaaggatgagaataattccgagaggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

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