KEGG T01509: MSWAN

Methanobacterium sp. SWAN-1: MSWAN_0175

Entry

MSWAN_0175 CDS T01509

Definition

DNA ligase (EC:6.5.1.1)

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

mew Methanobacterium sp. SWAN-1

Pathway

mew03030	DNA replication
mew03410	Base excision repair
mew03420	Nucleotide excision repair
mew03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:mew03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:mew03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:mew03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:mew03430]

SSDB

Motif

Pfam:

DNA_ligase_A_N DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

201762..203447

AA seq 561 aa
MNSKINMKYMELVEVYEALDSTTKRLEKTSILAKFFKIMGNEEPELLPIVTLMSLGRIFP
TWSEEELGLGSKLLMKAISLVAGVGPDDVENMTRDAGDIGLAAETLLKRKQQSTLFARQP
LTIEKVHSNLIKITKISGNRAQNKKMEILRELFSSASPKEAKYITRTVLEELRVGVGEGT
IKDAISEAFEVEKTAVERAHMLTNDLGLVAEVAKEEGEEGLGKLTLKPGKPVKPMLAQLS
PGIKISVEEMGWALCETKYDGIRVQIHRLGDDINIFTRRLENISNAVPEIVEYIRKSLPA
CDFIVEGEIIVTRDGKPISFQYILQRVRRKYDIEKMREKVPLKLYLFDVLYYDGPQIDTP
FEERRRILESIVTVTEHKLELSSQVKTTPEEIWKAEDLFTASIKGGHEGIMIKDPHAPYM
PGIRGKKMLKLKAVPETLDLVIVGGTYGKGRRAHVIGSYLLAVRDENNDFKTLAHAATGL
DDNMLIELSRMVEPLIVKKMGRKVEITPSIILEIAYSEIVKSPEYESGYSLRFPVVKRIR
EDIGLDDIDTVERVDSMFKEV

NT seq 1686 nt +upstreamnt +downstreamnt
atgaattcaaaaatcaatatgaaatatatggagcttgtggaagtttatgaagcattggat
tccacaactaaacggcttgagaaaacctcaattttagcgaagttctttaagatcatggga
aacgaagagcctgaacttctcccaattgttactttgatgtcacttggaagaatatttcca
acatggagtgaggaagaactcggattgggttctaaacttcttatgaaagcaatatctctg
gttgctggtgtgggccctgatgatgttgaaaacatgacgagggatgcaggggatataggc
ctggctgcagagacactcctcaaaagaaagcagcagtcaactctttttgcaaggcaacca
ttaaccattgagaaggttcacagcaacttaataaagataacaaagatatcgggaaacaga
gcccaaaataagaagatggaaattttaagggagttattctcatctgcatcacctaaagag
gccaaatacataacaagaacagttttagaagagttaagagttggagtgggtgagggaaca
ataaaagatgccatttcagaggcatttgaagttgaaaaaaccgctgttgagcgggcacac
atgctcacaaacgatctggggcttgttgcagaggtagcaaaggaagaaggtgaggaagga
cttggaaaacttactctgaaacccggaaagcctgttaaacccatgcttgcacagttatca
ccaggtatcaaaatcagcgtagaagaaatgggatgggctctctgtgaaacaaaatatgat
ggtatacgggttcagattcacagattgggagatgatatcaacatattcacccgaagactt
gaaaacatttcaaatgcagtacctgaaatcgttgaatacataagaaaatcgttacctgcc
tgtgacttcattgttgaaggtgaaataattgttacccgagatggaaaaccaatttcattc
cagtacatactccagagggttaggaggaagtatgatattgagaagatgagggagaaggtt
cctctgaaactctatttatttgacgttctttactacgatgggcctcagattgatactccg
tttgaggagaggcgaaggatacttgaatcaattgtaactgttacagaacacaagcttgaa
ctttccagccaggtcaaaacaacacctgaagaaatatggaaggctgaagatctttttaca
gcatccataaaaggtgggcatgagggtataatgataaaggatccacatgcaccatatatg
cctggtatacggggtaaaaaaatgcttaaattaaaggcagtacctgaaactcttgatctt
gttattgttggcggaacctacggcaaagggaggagggctcatgttataggttcttattta
cttgcggttagggatgaaaacaatgatttcaaaactttagcccatgcagcaacaggactg
gatgataacatgttaattgaactttccagaatggttgaaccgcttattgtgaagaagatg
ggtcgaaaggttgaaataactccttcaataattcttgagattgcctacagtgaaatagtg
aaaagtccagaatacgagagcggttactccttgaggttccctgttgtcaagaggataaga
gaagatattggtcttgatgatattgatactgttgaaagggttgactccatgtttaaagaa
gtttaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-MEW (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

Download RDF

DBGET integrated database retrieval system