KEGG   Methylorubrum extorquens PA1: Mext_3197
Entry
Mext_3197         CDS       T00640                                 
Name
(GenBank) DNA-directed RNA polymerase, omega subunit
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
mex  Methylorubrum extorquens PA1
Pathway
mex03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mex00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Mext_3197
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mex03021]
    Mext_3197
   03400 DNA repair and recombination proteins [BR:mex03400]
    Mext_3197
Enzymes [BR:mex01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Mext_3197
Transcription machinery [BR:mex03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Mext_3197
DNA repair and recombination proteins [BR:mex03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Mext_3197
SSDB
Motif
Pfam: RNA_pol_Rpb6 MinE T2SSS_2
Other DBs
NCBI-ProteinID: ABY31584
UniProt: A9VYZ2
Position
complement(3549907..3550317)
AA seq 136 aa
MARVTVEDCIEKVENRFELVLLASHRARLLAAGAPLTVERDRDKNPVVALREIGDETITA
EDLKEQLIHSMQKYVEVDEPEAETVPLLSSSPAAAAVAPQSSSDDKNVQFDFMSEEDLLR
GLENLAPPTETDDEGE
NT seq 411 nt   +upstreamnt  +downstreamnt
atggctcgcgtcaccgtcgaagactgcatcgagaaggtcgagaaccgcttcgagctggtc
ctgctcgccagccaccgggcgcgcctgctcgccgccggcgccccgctgaccgtggagcgc
gaccgcgacaagaaccccgtcgtggcccttcgcgagatcggcgacgagaccatcacggcg
gaagatctcaaggagcagctcatccactcgatgcagaaatacgtcgaggtggacgagccc
gaggccgagaccgtgccgctcctgtcgagctcgcccgccgctgccgcggtggcgccccag
tcctcctcggacgacaagaacgtgcagttcgacttcatgagcgaggaggatctcctccgc
ggtctcgagaacctcgcaccgccgaccgagaccgacgacgagggcgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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