KEGG T00640: Mext

Methylobacterium extorquens PA1: Mext_3237

Entry

Mext_3237 CDS T00640

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

mex Methylobacterium extorquens PA1

Pathway

mex03410	Base excision repair
mex03420	Nucleotide excision repair
mex03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:mex03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:mex03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:mex03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

3590319..3592160

AA seq 613 aa
MNDFAHLLDRLAYEPRRNAKLRLLQDFFAGTPDPERGWALAAMTGGLTFREAKPALIRGL
VEERVDPVLFSLSHNYVGDLAETTALIWPGPEETPSLRMRGEGALKDEALSESPPHRRLP
ARTADEVTESLSPQTGRGDPPGPGHNNPPPSVPTLAEVVETLASTPKRELPQHLAHWLDA
LDETGRWALLKLVTGNLRVGVSARLAKTAVGVLGGHEADAVEEVWHGLKPPYTELFAWVE
GRGERPESRNPAPFRPPMLSHPVEEFEDLDKLEPEAFSAEWKWDGIRVQLAGGRDGQGRQ
VQKVYSRTGEDISDAFPDLAEAITFDGAIDGELLILREGRVQSFNVLQQRLNRKAVTGKL
LEEFPAHVRAYDVLAAEGEDLRPLPFAERRPRLDALVRRLDHARIDLSPLVPFTTWDEVA
AARADPASAGAGADADAIEGVMLKRLNSSYLPGRPKGPWWKWKREPYVVDAVMMYAQRGH
GKRSSFYSDYTFGCWREGAEGEELVPVGKAYHGFTDAELQKLDRYVRNHTTKRFGPVREV
AYGREAGLVLEIAFEGVQRSTRHKSGVAMRFPRVSRIRWDKPAAEADRVDVLERILARGE
REVAPGAAMEASE

NT seq 1842 nt +upstreamnt +downstreamnt
gtgaacgacttcgcccaccttctcgaccgcctcgcctacgagccgcgccgcaacgccaag
ctgcgcctactccaggatttcttcgccggcacccccgacccggagcgcggctgggcgctc
gccgccatgaccggcggcctcaccttccgcgaggccaagccggcgctgatccgcgggctg
gtggaggagcgggtcgatccggtgctgttttcgctctcgcacaactatgtcggcgatctc
gccgagacgacggcgctgatctggccggggccagaggagaccccctctctccgcatgcgg
ggagagggggccttgaaggacgaggctctttcggaatcgccccctcaccgtcgcctgccg
gctcgcactgccgacgaggtcaccgaatccctctccccgcaaacggggagaggggatccc
cccggtccgggccacaacaacccgccgccctccgtccccaccctcgccgaggtcgtcgaa
acgctcgcctccaccccgaagcgcgaactgcctcagcatctcgcccactggctcgatgcc
ctcgacgagaccgggcgctgggcgctcctcaagctcgtcaccggtaatctgcgcgtcggc
gtctcggcccgtctggccaagacggcggtgggcgtgctcggcggccacgaggcggatgcg
gtcgaggaagtctggcacgggctgaaaccgccctacaccgagctgttcgcctgggtggag
ggacggggcgaacggccggagagccgcaacccggccccgttccggccgccgatgctctcg
cacccggtggaagagttcgaagacctcgacaaactcgaaccggaggcgttctcggcggag
tggaaatgggacggcatccgcgtccagctcgcgggcgggcgcgacggccagggccggcag
gtacaaaaggtctattcgcgcaccggcgaggacatttccgacgcgttccccgacctcgcc
gaggcgatcaccttcgacggcgcgatcgacggcgaactgctgatcctgcgcgaggggcgg
gtccagagcttcaacgtgctccagcagcggctcaaccggaaggcggtgacgggcaagctc
ctggaggagttcccggcccatgtccgcgcctacgacgtgctggcggccgagggcgaggac
ttgcgcccgctgcccttcgccgagcgccgtcctcggctggatgccctggtgcggcggctc
gaccatgcccggatcgatctctcgccgctcgtccccttcaccacctgggacgaggtggcc
gccgcccgcgccgacccggcctcggcgggggccggcgcggatgccgacgccatcgagggc
gtgatgctcaagcggctcaacagctcctacctgccgggccgccccaagggcccgtggtgg
aagtggaagcgcgagccctacgtggtcgatgcggtgatgatgtacgcccagcgcgggcac
ggaaagcgctcgtccttctactcggactacaccttcggctgctggcgcgagggggcggaa
ggcgaggagctggtgccggtcggcaaggcctatcacggcttcaccgatgccgagctgcag
aagctcgatcgctacgtccgcaaccatacgaccaagcgcttcggcccggtgcgcgaggtc
gcctatggccgcgaggccgggctggtgctggagatcgccttcgagggcgtgcaacgctcg
acgcggcacaaatcgggcgtggcgatgcgcttcccccgcgtcagccgcatccgctgggac
aagccggcggcggaggccgaccgggtcgatgtgctggaacggatcctggcgcgcggcgag
cgcgaggtcgcgccgggcgcggcgatggaggcatcggaatga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-MEX (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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