KEGG   Methanobacterium formicicum DSM1535: DSM1535_0180
Entry
DSM1535_0180      CDS       T03743                                 
Symbol
fen
Name
(GenBank) Flap endonuclease 1
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
mfi  Methanobacterium formicicum DSM1535
Pathway
mfi03030  DNA replication
mfi03410  Base excision repair
mfi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mfi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DSM1535_0180 (fen)
   03410 Base excision repair
    DSM1535_0180 (fen)
   03450 Non-homologous end-joining
    DSM1535_0180 (fen)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mfi03032]
    DSM1535_0180 (fen)
   03400 DNA repair and recombination proteins [BR:mfi03400]
    DSM1535_0180 (fen)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mfi04147]
    DSM1535_0180 (fen)
DNA replication proteins [BR:mfi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    DSM1535_0180 (fen)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     DSM1535_0180 (fen)
DNA repair and recombination proteins [BR:mfi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DSM1535_0180 (fen)
Exosome [BR:mfi04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   DSM1535_0180 (fen)
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc dsRBD2 EMC3_TMCO1
Other DBs
NCBI-ProteinID: CEA12545
UniProt: A0A090I4B2
Position
182651..183637
AA seq 328 aa
MGVKFKDIVSSEEIRFEDLNGKVVALDAANVIYQFLSSIRQLDGTPLKDQNGRVTSHFSG
ILYRTSSLVEKGMKPVYVFDGRSSALKKETQQKRKEIKEESERRWKEALEEGRLDDARKF
AVRSSRMSPEIVEGSKKLLKLMGIPYIQAKGEGEAQASYMVERGDAWCVASQDYDCILFG
ASRMVKNLTISGGQASPELIQLNKILKNLDVTRQQLVDLAIMVGTDFNQGIKGIGAKKGL
KLIKKHGDIYHALEHLDVELDVDPDILRDMFLNHEVESHYQLKWQKANPEEIVEFLCREH
DFSEDRVLTAVDKLKKLETTQSSLEQWF
NT seq 987 nt   +upstreamnt  +downstreamnt
atgggagtgaagttcaaggatattgtatcttccgaagaaatcaggtttgaggatcttaat
ggtaaagtggtggctctggacgcagcgaatgttatttaccagtttctttccagtattcgc
cagctagacggcacccctctcaaagaccagaacgggcgagtgacctcgcattttagtgga
atactgtatcgtacatcttccctggtagaaaagggaatgaaaccggtttatgtttttgac
gggcggtccagtgctcttaaaaaggagactcaacagaaaaggaaagagatcaaagaggaa
tcagaacgcagatggaaagaagctctggaagaagggcgtttggatgatgcccgaaaattt
gcggtgagatcttcacgcatgtctcccgaaatcgtggaagggtccaaaaagcttcttaaa
ctcatgggaatcccttatatccaggctaaaggggaaggagaagcccaggcctcttatatg
gtggaacgtggtgatgcttggtgtgtggcctcccaggattacgattgtattttattcgga
gcttcccgcatggttaagaacctgaccatcagtgggggccaggcctctccagaactcatc
cagctgaataagatcctgaaaaatctggatgtaacccgccagcaactggtggatctggcc
ataatggtaggtacagatttcaaccagggaatcaaaggtattggggcaaagaagggtttg
aaactcattaaaaaacacggcgacatatatcatgccctggaacacttggatgtggagctg
gatgttgatccggatattttacgggatatgttcctcaaccatgaagttgaatcccactac
cagttgaaatggcagaaggccaatccagaagaaattgtggagttcttatgccgagaacat
gatttttccgaagacagggtattgactgccgtggacaaactgaaaaaactggaaaccacc
cagagcagcctggaacagtggttctag

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