KEGG   Mesomycoplasma flocculare: MYF_02980
Entry
MYF_02980         CDS       T03538                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
mfq  Mesomycoplasma flocculare
Pathway
mfq03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mfq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    MYF_02980 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mfq03021]
    MYF_02980 (rpoC)
   03400 DNA repair and recombination proteins [BR:mfq03400]
    MYF_02980 (rpoC)
Enzymes [BR:mfq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     MYF_02980 (rpoC)
Transcription machinery [BR:mfq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     MYF_02980 (rpoC)
DNA repair and recombination proteins [BR:mfq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      MYF_02980 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 HcgB
Other DBs
NCBI-ProteinID: AJC50083
UniProt: A0A0A8E7Y7
Position
678729..682964
AA seq 1411 aa
MNTKVSRQYAQIYENSIEKISLAMATPEDVLEWSRGEVSRPETINYKTFKPERGGLFDEL
IFGPLVDFKCSICGRKYRKSNENQLCVATKDCQISKSQIMSKLSRRYAMGHIALNAPILH
FWFFKIDHSIIAKLLGLKVIEGNKPATTITKTAIEHLIYYKSHIVLETGGLKSLQKNKII
DIADAALVYRNALVEILEFYAPETEEYEAISEALSELTEVASSRIGREYGIDYYELNEII
EEFSDARIATGTKAIEYLLEKLNLHAEKAQIEQEIAVIQKQIRTSKKIIIKHQKRDKLYK
RLQVINAFINSGQDPKVMIIKNLPVIPADLRPLIQLDGSRHSTSDCNELYRRIIIRNNRL
KRWKDAEAPVIIIQNEMRMLQEAVDALIDNQKKSTNQVTTKENRPLKSISDSLTGKKGRF
RQNLLGKRVDYSGRSVIVVGPKLKMHQAGLPRKMAAVLFEPWIIKNLIQEKIAGSIKSAR
KMIEEENPIIWPHVAKVIENKPIILNRAPTLHRLSIQAFDPVLVRAKAIQLHPLVTAGFN
ADFDGDQMAVHIPISPDAIRETRELMFADKNILGPKDGEPIVNPSQDMVLGIYYLSQEKA
GAKGEGSFFSSYDEMQKAYEFRAVDLHARVVLPFEIVKPLIGKNTRGHLISTVGKFILNK
VFPDNFPFIFDQKVDDLELDYHLKIKKYVLPYGANFRDYIANLEINEPLDKKAIAKIVRQ
IYDNYNGVLAKEDIATVIDQLDFENYENCILMYEKLRDYKGDKLPISHLSKLTEFTISEF
KKLFKREDQPMQIETYRVFEDHEKVELLEKIWFNYNNMVCSILDKIKDLGFYYSTISGTS
IAISDIKIAPRKHEFIAEGEDYINKLNAFYTKGLITDDERYVLSIAKWTQIKNDIQADLS
ESVANDQQNSLVMMMKSGARGNISNFVQLAGMRGLMANNVKALKVDAENERVVRSIVEVP
VKSSFLEGLTSFEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQNIVVKENDCFSDF
GFVVKDIVDTKTNTIIVPLIERIEGRFLNKDVYDSKGIKLASADTLIDLQTAKKIIAAGI
KKVEIRSILSCHTKNSVCKKCYGKDLSTNRLVTIGEAVGIIAAQSIGEPGTQLTMRTFHT
GGVANVEDITGGFTRLIELIDSHEHPWGRPAKISPYYGIITKISDLAEKNAVNKGFLITI
EYKVSKTERAEHIIRIEQNQKLRVKVGDKVIPGQKLVEGPIILKELLAISDARTLQNYLL
KEIQRIYRMQGITISDKYIEIIIRQMLSKIQIIESGDSNFFVGSIVDISEYQEVNGQLLS
EGKKPAFGNVIVKGAKQIPLLSNSFLAAASYQETSKILVHSVISSQVDRLEGLKENIIVG
HKIPAGTNSNYEPKSKFDIPNPFNFFIKTSR
NT seq 4236 nt   +upstreamnt  +downstreamnt
atgaacacaaaagtttcgcgacaatatgcccaaatttacgagaattcaattgaaaaaatt
tcgcttgcaatggcaactccagaagatgttcttgaatgatctcgaggcgaagtttcaaga
cctgaaacaatcaattacaaaactttcaaacctgagcgcggtggtctttttgatgaacta
atttttggtccgcttgttgattttaaatgttcaatttgtgggcgaaaataccgaaaatct
aacgaaaatcaactttgtgttgccacaaaagattgtcagatttcaaaatcgcagataatg
tcaaaattatcgcgccgttatgcaatgggacatattgctttaaatgcgccgattcttcac
ttttgatttttcaaaattgaccattcaattatcgctaaattattaggacttaaagtaatt
gaaggtaataaacctgcaactaccattaccaaaaccgcaattgaacatttaatttattat
aaatctcacattgttcttgaaacaggaggactaaaatctctacaaaaaaacaagattatt
gatattgctgatgctgcgcttgtttatcgtaatgctcttgttgaaattcttgaattttat
gctcccgaaaccgaagaatatgaggcaatttctgaggctttatccgaacttaccgaagtt
gcctcaagtcgaattggtcgtgaatacgggattgattattatgaattaaacgaaataatc
gaagaattttctgatgcccgaattgcaacaggaacaaaagcaattgaatatttgctagaa
aaattaaatttgcatgccgaaaaagcgcaaattgaacaagagatcgctgttatccaaaaa
caaattagaacaagcaaaaaaattatcataaaacaccaaaaaagagacaaactttataaa
agattacaagtaattaacgcttttattaattcaggacaagatccaaaagtaatgataatt
aaaaatttgccagtaattcccgcagatttacgaccacttatccaacttgatggctcccgt
cattcaactagtgattgcaatgaattatatcggagaatcatcattcgtaacaatcggcta
aaaagatgaaaagatgcagaagccccggtaattattatccaaaatgaaatgcgaatgctc
caagaagccgttgatgctttaattgataatcaaaaaaaatcaaccaaccaagtaacaaca
aaagaaaatcggccattaaaatcgatttccgattcgctaaccgggaaaaaaggaagattt
cgccaaaacctcttaggcaaacgcgtagattattctggtaggtcggtaattgttgtcggg
cctaaattaaaaatgcatcaagcgggattacctcgaaaaatggctgcagttttgtttgaa
ccttgaattattaaaaatttaattcaagaaaaaatcgccggttcaattaaatccgcgcgg
aaaatgattgaagaagaaaaccctattatctggcctcatgttgcaaaagtaatcgaaaat
aagccaataattttgaatagagcaccaactttgcaccggctttcaattcaagcctttgac
cctgttttggtaagagcaaaagcaattcagctccatccacttgtcaccgctggatttaac
gctgattttgatggcgaccaaatggcagtccatatcccgatttctcctgatgctatcaga
gaaacgcgagaattaatgtttgccgataaaaatattttaggaccaaaagatggcgagcca
atcgttaatccttcacaagacatggttttaggtatttattatttatcccaagaaaaagcc
ggtgcaaaaggcgaaggttcctttttttcttcttatgatgaaatgcaaaaagcctatgaa
ttcagagcagttgaccttcatgcccgggttgttttaccttttgaaattgtaaaaccactt
attgggaaaaacacgcgtggacatttaatttcaacagtgggaaaatttattctaaacaaa
gtttttcctgataattttcctttcatttttgatcaaaaagttgatgacttagaacttgac
tatcaccttaaaataaaaaaatatgtcctgccttatggcgctaatttccgtgattatatt
gcaaatttagaaattaatgaacctttagataaaaaggcaattgccaaaattgtaagacaa
atttatgataattataatggtgtgcttgcaaaagaagatattgccactgtaattgatcag
cttgattttgaaaattatgaaaattgtattctcatgtacgaaaaacttcgcgattataag
ggggataaactaccaatttctcacctttcaaaattaacagaatttaccatttccgaattt
aaaaaactattcaaacgcgaagatcaaccaatgcaaattgaaacttaccgtgtttttgag
gaccatgaaaaagttgaactacttgaaaaaatttggtttaattataataacatggtttgc
tcaattcttgataaaattaaagatttaggtttttactattcaacaatttcaggaacttcg
attgcaatttcggatatcaaaatcgccccaagaaaacacgaatttattgctgagggcgaa
gattatataaataaattaaacgctttttataccaaagggcttataacagatgatgaaaga
tatgtgctttcaattgcaaaatgaacgcaaattaaaaatgatattcaagccgatcttagt
gaatctgttgcaaatgatcaacaaaattcacttgtaatgatgatgaaatctggggcaaga
ggaaatatttctaactttgtgcaactagcaggaatgcgcggcttgatggcaaataatgtc
aaagcacttaaagttgatgctgaaaatgaacgtgttgtccgttcgattgttgaggttccc
gttaaatcttccttccttgaaggtttaacttcttttgaattttactcttcaactcacggt
gcgcgaaaagggctaactgatacagcgcttaatactgcaaaatccggatatcttactaga
cgacttgtcgatgttgcccaaaacattgtcgttaaagaaaatgattgtttttccgatttt
ggttttgtggtaaaagatattgtcgatacaaaaacaaatacaataattgtgcctttaatt
gaaagaattgaaggacgatttttaaacaaagatgtctatgattctaaaggaattaagctt
gcaagcgcagatacgcttatcgatttacaaactgcgaaaaaaattattgccgcaggtatt
aaaaaagtcgaaattcgctccattttgtcttgccataccaaaaatagtgtttgcaaaaaa
tgttatggaaaagatttatcaacaaatcgtcttgtgacaatcggtgaagctgttgggatt
atcgccgcgcaatcaattggtgaacccggaactcaactgacaatgcgaactttccatact
ggcggggttgctaatgttgaggatataaccggcggatttacaaggttaattgaactaatt
gattctcacgaacatccttgaggacgaccagcaaaaatttcgccttattatggaataatt
acaaaaatttccgatcttgccgaaaaaaatgcggtaaataaaggttttttaatcacaatt
gaatataaagtatctaaaaccgaaagagcagaacatattatccggatcgaacaaaaccaa
aaattgcgtgttaaagttggcgataaagtaattccgggtcaaaaactggttgaaggacca
ataattttaaaagaattactcgcaatttctgatgctcgcacattacaaaactacctttta
aaagaaatccaaagaatttaccgaatgcaaggaattacaatttctgataaatatatcgag
attattattcggcaaatgctttcaaaaattcaaattatcgaaagtggtgattcgaatttc
tttgttggctcaattgtcgatattagcgaatatcaggaagttaacggtcagttgctatca
gaagggaaaaagccagcttttggaaatgttattgtcaaaggcgcaaaacaaattccgctg
ttatcaaattcctttcttgcagctgcaagttatcaagaaacctcaaaaatactcgtacat
tctgtaatttcttcacaagttgaccgacttgaagggctaaaagaaaacattattgtcgga
cataaaattccagctggtactaattcaaattatgaaccaaaatcaaaatttgacatccct
aatcctttcaatttctttataaaaaccagccgttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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