KEGG   Corallococcus macrosporus HW-1: LILAB_20090
Entry
LILAB_20090       CDS       T01558                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
mfu  Corallococcus macrosporus HW-1
Pathway
mfu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mfu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LILAB_20090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mfu03021]
    LILAB_20090
   03019 Messenger RNA biogenesis [BR:mfu03019]
    LILAB_20090
Transcription machinery [BR:mfu03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     LILAB_20090
Messenger RNA biogenesis [BR:mfu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     LILAB_20090
SSDB
Motif
Pfam: ATP-synt_ab AAA_25 Rho_RNA_bind AAA_22 NACHT AAA_16 ResIII AAA Spore_III_AA VWA_2
Other DBs
NCBI-ProteinID: AEI65920
UniProt: F8CBV4
Position
complement(4738931..4740016)
AA seq 361 aa
MEGVLDTEVKGPNAFLRQLKRNLLAAPDDPELPKNLVQKLRLRQGQYVTAFAQMRGHKGV
IQKVDTVDGRPLEGAPRLPHFADLTSVDPTERLKLENGHKEMVTRVLDLISPIGKGQRAL
IVAPPKTGKTIMLQRIAQAILSNHPECHVMVVLIDERPEEVTDMRRSIKAEVLASSSDRP
TADHLKVAELALERARRLVESGKDVVILLDSITRLARAFNKEVDNSGRTMSGGVDSRALE
RPKRIFGAARATEEAGSLTIIGTALIDTGSRMDEVIFEEFKGTGNSEVTLDRLLAEKRVF
PAVNIAQSGTRKEEKLFTLREYEKVKKLRQMLFSVKPVEAMEALVKRLSRYTYNDEFLDE
L
NT seq 1086 nt   +upstreamnt  +downstreamnt
gtggagggcgtgctggacacggaggtcaagggccccaacgccttcctgcgtcagctcaag
cgcaacctgctggcggcgccggacgacccggagctgcccaagaacctggtccagaagctg
cggctgcggcagggccagtacgtcaccgccttcgcgcagatgcggggccacaagggcgtc
atccagaaggtggacacggtggacggccgccccctggagggcgcgccgcggctgccgcac
ttcgcggacctgacgtcggtggaccccaccgagcggctcaagctggagaacgggcacaag
gagatggtgacccgggtgctggacctcatctcgcccattggcaaggggcagcgcgcgctc
atcgtcgccccgccgaagacggggaagaccatcatgctccagcgcatcgcccaggccatc
ctctccaaccacccggagtgccacgtcatggtggtgctcatcgacgagcggccggaggaa
gtgacggacatgcggcggagcatcaaggcggaggtgctggcctccagctccgaccgcccc
accgcggaccacctcaaggtggcggagctggccctggagcgcgcgcgccggctggtggag
tccggcaaggacgtggtcatcctcctggactcgattacgcgtctggcccgcgccttcaac
aaggaggtggacaactccggccgcaccatgtccggcggcgtggacagccgcgccctggag
cgccccaagcgcatcttcggcgccgcccgcgcgacggaggaggccggctcgctgaccatc
atcggcacggcgctcatcgacaccggcagccgcatggacgaggtcatcttcgaggagttc
aagggcacgggtaactccgaagtcactttggaccgcctcctggcggagaagcgcgtcttc
ccggccgtcaacatcgcccagtccggcacccgcaaggaggagaagctcttcaccctgcgc
gagtacgagaaggtgaagaagctgcggcagatgctcttctccgtgaagccggtggaggcc
atggaggcgctcgtgaagcggctgtcgcgctacacctacaacgacgagttcctcgacgag
ctctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system