KEGG   Meleagris gallopavo (turkey): 100544728
Entry
100544728         CDS       T01523                                 
Symbol
PARN
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
mgp  Meleagris gallopavo (turkey)
Pathway
mgp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mgp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100544728 (PARN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mgp03019]
    100544728 (PARN)
Enzymes [BR:mgp01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     100544728 (PARN)
Messenger RNA biogenesis [BR:mgp03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     100544728 (PARN)
SSDB
Motif
Pfam: CAF1 RNA_bind R3H NCBP3 RRM_1
Other DBs
NCBI-GeneID: 100544728
NCBI-ProteinID: XP_010718009
Ensembl: ENSMGAG00000001004
UniProt: G1MQS6
Position
16:complement(12679769..12716022)
AA seq 808 aa
MANVATENTELAFVESHVNSSLFRPCHCAGQSALRPRSKCNKNSGSGFASYLINSFNQTR
YGHVRFCGESAQPERCRGGSSARILRFRFESPQAAPRFMSSAGDVRAGRRQRGAARAAMP
LAVRAGTAPNSHFPFSVLLPQGSAERRGASLCPRENRRCSERESFPRPVTSGVLLPLAAD
FKDNLSKVYEAVEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFXLF
QFGLCTFKYDHTEEKYIMKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQGFDFNKVF
RNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVAIPEDQKKFIDKIVEQ
IEEFLKNNENESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIVISKVDEE
ERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQFYCPLPDD
LSEFKEVTSCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKEVPFSPPKVESAEGFP
SYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFNKLFLMRV
MDIPYLNLQGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSAFVSLSQ
PEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKRAKRKCTEDSWKEMERKRLKTQGAPYI
SQSRYHCVNSFTGTSIVGKRSMSPIQEETGSDNLEEEGVPEDQTNSNAESPPDVKKKAKR
FKKIKREQVSAGSLTSNSTEIFEVPETW
NT seq 2427 nt   +upstreamnt  +downstreamnt
atggcaaacgttgctacagaaaacacggagctggcttttgtggagagccacgtgaactcc
tcgttgttccgcccgtgtcactgcgccgggcaaagcgccctccgcccccgttccaaatgc
aacaagaactcgggctccggctttgcttcgtatttgataaactcatttaatcaaacccgt
tacggacacgtgcggttctgtggggaatcggctcagcccgagcgctgccggggcggctcc
tccgctcggattctccggtttcgctttgagagcccccaggccgccccgcgcttcatgtcc
tcggctggagacgttcgagccggcagacggcagcgcggagcggcccgggccgcgatgccg
ctcgccgtgcgtgctggaaccgccccaaattcccacttcccgttctccgtccttcttccc
caggggagcgcggagcgccgcggagcgtccttgtgccctcgtgagaaccggcggtgcagc
gaacgggagtcgttcccccggccggtcacctcaggtgtgcttttacctcttgccgcagat
tttaaggataacctaagcaaagtgtacgaagctgtcgaagaggcggacttcctggccatt
gatggggagttctcagggatcagcgatgggccttctgttagtgcattaaccaatggcttt
gacacaccagaagaacggtatcagaaacttaaaaagcattccatggattttntgctcttt
cagtttggcctttgcacttttaaatatgaccacacagaagagaagtatattatgaagtca
tttaatttctatatttttccaaaaccctttaacagaagttcaccggatgtcaagtttgtc
tgtcagagttcaagcatagattttttagcaaaccaaggatttgattttaacaaagttttt
cgtaatggaattccgtatttaaatcaggaagaggaaagacagttaagagaacagtatgat
gaaaagcgttctcaggccaatggtgcaggatctctctcctatatttctcctaatgccaca
aaatgtcctgttgcaattcctgaagatcagaaaaaattcattgataaaatagtagaacaa
atagaagaatttttaaagaataacgaaaatgaaagtttggaactggagccatgtacaggg
tttcagaggaaactaatttaccagaccttgagctggaagtatccaaaaggtatccacgtt
gaaaccctagagtcagataagaaggagagatatattgttattagtaaggtagatgaagaa
gaacgaaaaagaagagaacagcagaaacaagcaaaggaacaggaagaactgaatgatgca
gtaggattttccagagttgttcatgccattgcaaattctggcaaacttgttattgggcac
aacatgctgctagatgttatgcatactatacatcagttctattgtcctctacctgatgac
ctaagtgaattcaaagaagtaacgtcatgtgtctttccccggctattggatactaaactg
atggcaagtacgcaaccttttaaggacatcattaataatacatcccttgcagaactggaa
aagcgtttaaaagaggttccgttcagccctcctaaagttgaaagtgcagaagggtttcca
agttatgacacagcttctgaacaacttcatgaagcgggatatgatgcttacattactgga
ctgtgtttcatctccatggctaactttctaggttcgtttcttagtcctccgaaaaatcat
gtgtctgctagatcaaaactcatcgaacctttttttaacaagctatttcttatgagagta
atggacataccatatctgaatttgcaaggaccagacttgcagccaaaacgagatcatgtt
cttcatgtcacttttcccaaagagtggaagactagtgacctttaccagctttttagtgcc
tttggtaacattcaggtttcatggattgatgatacatcagcatttgtatcattgagccag
ccagaacaagtacaaatagctgtgaacaccagcagatatgctgaaagttacaggatccag
acatacgcagaatatgttgaaaaaaaacatgaagaaaagcgagcaaagagaaaatgtacg
gaagatagttggaaagagatggagagaaaacggttgaaaactcaaggtgcaccttacatt
tcccagagtcgataccactgtgttaacagttttacaggtaccagtatagtgggaaagaga
agtatgagtcctattcaggaagaaactggttctgacaatttggaagaggaaggggttcca
gaagatcagacaaactccaatgcagagtcacctccagatgttaagaagaaagccaaaagg
ttcaaaaaaatcaagagagaacaagtttcagcaggaagcctcacaagtaattccactgaa
atttttgaagtccctgaaacatggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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